C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ras homolog gene family, member J
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172981 Rhoj-005 ENSMUSG00000046768 10090 + 12:75308881-75400212 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000172981
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000172981 58.340±15.37 12.315±0.42 1.215±0.00 43.577±7.18 27.162±1.88 25.788±0.53 12.276±0.82 2.087±0.23 70.526±7.42 56.581±7.63 4.205±0.00 1.392±0.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SH CIL_0006SH_0003 CGP 12:74897217-75401456
CIL_0000S2 CIL_0000S2_0002 CGP 12:75308322-75416781

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 ISS GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0006184 ISS GTP catabolic process
GO:0007266 IDA Rho protein signal transduction
GO:0008360 IDA regulation of cell shape
GO:0030036 IDA actin cytoskeleton organization
GO:0061299 IMP retina vasculature morphogenesis in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000238738 RHOQ-001 protein_coding Homo_sapiens 3e-22 111
ENST00000316754 RHOJ-001 protein_coding Homo_sapiens 0 462
ENST00000432183 RHOQ-003 nonsense_mediated_decay Homo_sapiens 0 230
ENST00000437982 RHOQP3-001 processed_pseudogene Homo_sapiens 6e-18 95
ENST00000449922 RHOQP2-001 processed_pseudogene Homo_sapiens 1e-19 100
ENST00000473428 RHOQ-007 nonsense_mediated_decay Homo_sapiens 8e-23 111
ENST00000482449 RHOQ-002 protein_coding Homo_sapiens 5e-19 99
ENST00000489471 RHOQ-006 nonsense_mediated_decay Homo_sapiens 9e-23 111
ENST00000494370 RHOQ-005 retained_intron Homo_sapiens 3e-17 94
ENST00000555125 RHOJ-005 protein_coding Homo_sapiens 3.00004e-41 172
ENST00000555758 RHOQP1-001 processed_pseudogene Homo_sapiens 3e-21 106
ENST00000557133 RHOJ-004 processed_transcript Homo_sapiens 3.00004e-41 172
ENST00000557447 RHOJ-003 nonsense_mediated_decay Homo_sapiens 8.99998e-41 172
ENST00000616091 RHOQ-201 protein_coding Homo_sapiens 7e-23 111

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