C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000V3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000058259-ENSDARG00000045506 CGP 7955 25:20244007-20426670
GeneTranscriptPositionBiotype
ENSDARG00000045506 (GRAMD4 (1 of 2))
GRAM domain containing 4 		ENSDART00000047251 (GRAMD4 (1 of 2)-001) 20360675-20426670 protein_coding
ENSDART00000155029 (GRAMD4 (1 of 2)-003) 20403683-20414084 protein_coding
ENSDART00000156232 (GRAMD4 (1 of 2)-002) 20360944-20373602 retained_intron
ENSDARG00000058259 (celsr1b)
cadherin EGF LAG seven-pass G-type receptor 1b 		ENSDART00000128852 (celsr1b-001) 20244007-20355181 protein_coding
CIL_0000V3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000075275-ENSG00000075240 CGP 9606 22:46360834-46679790
GeneTranscriptPositionBiotype
ENSG00000075240 (GRAMD4)
GRAM domain containing 4 		ENST00000361034 (GRAMD4-201) 46626761-46679790 protein_coding
ENST00000406902 (GRAMD4-001) 46620402-46679785 protein_coding
ENST00000408031 (GRAMD4-002) 46674608-46679683 protein_coding
ENST00000431155 (GRAMD4-003) 46577129-46626899 protein_coding
ENST00000447351 (GRAMD4-004) 46576012-46637936 protein_coding
ENST00000456069 (GRAMD4-006) 46663107-46671167 protein_coding
ENST00000490378 (GRAMD4-005) 46626843-46637958 processed_transcript
ENSG00000075275 (CELSR1)
cadherin, EGF LAG seven-pass G-type receptor 1 		ENST00000262738 (CELSR1-001) 46360834-46537170 protein_coding
ENST00000454637 (CELSR1-002) 46462780-46535294 protein_coding
ENST00000468025 (CELSR1-005) 46372913-46377624 processed_transcript
ENST00000473624 (CELSR1-003) 46361174-46365380 retained_intron
ENST00000497509 (CELSR1-004) 46530308-46534200 processed_transcript
ENSG00000230634 (RP5-996D20.3)
 ENST00000447383 (RP5-996D20.3-001) 46481329-46481760 processed_pseudogene
ENSG00000234869 (RP3-439F8.1)
 ENST00000426112 (RP3-439F8.1-001) 46541495-46548196 antisense
CIL_0000V3_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000016028-ENSMUSG00000035900 CGP 10090 15:85898758-86137634
GeneTranscriptPositionBiotype
ENSMUSG00000016028 (Celsr1)
cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila) 		ENSMUST00000016172 (Celsr1-201) 85898758-86033777 protein_coding
ENSMUSG00000035900 (Gramd4)
GRAM domain containing 4 		ENSMUST00000088931 (Gramd4-001) 86057695-86137634 protein_coding
ENSMUST00000123349 (Gramd4-003) 86058872-86137631 nonsense_mediated_decay
ENSMUST00000123474 (Gramd4-005) 86067813-86122261 processed_transcript
ENSMUST00000138134 (Gramd4-002) 86058727-86137618 protein_coding
ENSMUST00000147286 (Gramd4-004) 86074733-86091434 processed_transcript
ENSMUSG00000089680 (Gm15722)
predicted gene 15722 		ENSMUST00000159271 (Gm15722-001) 86087640-86090060 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000V3_0001ENSDARG00000045506ENSDART00000047251ENSDART00000155029ENSDART00000156232ENSDARG00000058259ENSDART00000128852CIL_0000V3_0002ENSG00000075240ENST00000361034ENST00000406902ENST00000408031ENST00000431155ENST00000447351ENST00000456069ENST00000490378ENSG00000075275ENST00000262738ENST00000454637ENST00000468025ENST00000473624ENST00000497509ENSG00000230634ENST00000447383ENSG00000234869ENST00000426112CIL_0000V3_0003ENSMUSG00000016028ENSMUST00000016172ENSMUSG00000035900ENSMUST00000088931ENSMUST00000123349ENSMUST00000123474ENSMUST00000138134ENSMUST00000147286ENSMUSG00000089680ENSMUST00000159271
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000V3_0001ENSDARG00000045506ENSDART00000047251ENSDARG00000058259ENSDART00000128852CIL_0000V3_0002ENSG00000075240ENST00000361034ENST00000406902ENST00000408031ENST00000447351ENSG00000075275ENST00000262738ENST00000454637ENST00000473624ENSG00000230634ENST00000447383ENSG00000234869ENST00000426112CIL_0000V3_0003ENSMUSG00000016028ENSMUST00000016172ENSMUSG00000035900ENSMUST00000088931ENSMUST00000123349ENSMUST00000123474ENSMUST00000138134ENSMUSG00000089680ENSMUST00000159271
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000045506 ENSDART00000047251 N/A N/A N/A 4.829±1.32 N/A N/A 7.013±3.89 6.692±2.17 0.632±0.00 N/A 1.463±0.00 N/A N/A N/A
ENSDART00000155029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000156232 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000058259 ENSDART00000128852 N/A N/A N/A 1.070±0.00 N/A N/A 0.107±0.07 0.027±0.00 0.030±0.00 N/A 0.112±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000075240 ENST00000361034 N/A 1.228±0.00 0.850±0.00 N/A 2.424±0.32 1.015±0.55 5.775±0.00 2.287±0.30 N/A N/A 2.037±0.68 5.275±0.71 3.034±0.89 2.222±1.66
ENST00000406902 N/A N/A N/A 0.957±0.00 N/A N/A N/A N/A N/A 1.207±0.00 N/A N/A N/A N/A
ENST00000408031 3.886±0.00 3.209±0.00 N/A N/A 4.024±0.00 1.208±0.00 1.681±0.00 3.734±0.00 5.967±0.00 2.944±0.00 2.944±0.00 7.816±6.84 2.168±0.63 3.106±0.38
ENST00000431155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447351 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.026±0.00 N/A 8.665±0.00 N/A N/A
ENST00000456069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490378 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000075275 ENST00000262738 0.287±0.00 2.122±0.00 1.768±0.00 0.052±0.03 0.634±0.00 0.184±0.05 0.807±0.68 2.330±0.00 0.128±0.09 2.081±1.00 N/A 2.837±1.26 0.656±0.09 0.770±0.00
ENST00000454637 N/A N/A N/A N/A N/A 0.476±0.00 N/A N/A N/A N/A 0.039±0.00 N/A N/A N/A
ENST00000468025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473624 N/A 2.979±0.00 N/A N/A 0.348±0.00 N/A N/A 1.783±0.00 N/A 3.862±0.00 0.005±0.00 1.976±0.39 0.337±0.00 N/A
ENST00000497509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000230634 ENST00000447383 N/A N/A N/A N/A N/A 0.044±0.00 N/A N/A N/A N/A N/A 0.070±0.00 N/A N/A
ENSG00000234869 ENST00000426112 0.019±0.00 0.293±0.00 0.019±0.00 0.046±0.03 0.066±0.01 N/A 0.702±0.51 0.485±0.00 N/A 0.345±0.14 N/A 0.151±0.10 0.031±0.01 0.198±0.06
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000016028 ENSMUST00000016172 1.675±1.12 0.291±0.10 0.355±0.07 3.517±1.88 1.702±0.93 8.424±0.32 0.751±0.09 1.568±0.50 0.073±0.01 4.359±0.18 0.057±0.07 6.710±1.62 0.782±0.52 0.064±0.04
ENSMUSG00000035900 ENSMUST00000088931 10.360±2.83 2.869±0.90 4.066±0.22 9.190±7.57 7.614±2.64 4.971±1.75 11.000±1.20 6.337±0.66 3.131±1.89 7.538±0.73 3.595±0.71 5.490±2.61 4.014±2.25 0.258±0.21
ENSMUST00000123349 2.215±0.72 N/A 0.933±0.28 2.932±0.15 2.557±0.65 2.077±0.05 N/A N/A 0.659±0.21 1.362±0.12 N/A 1.589±0.40 0.474±0.00 0.032±0.00
ENSMUST00000123474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.284±0.00 22.317±8.59 1.312±0.00
ENSMUST00000138134 2.494±0.30 4.304±0.00 N/A 4.021±1.91 5.173±2.57 6.565±2.65 3.071±0.70 3.284±0.60 1.152±0.44 4.499±1.05 0.770±0.00 4.830±1.75 1.161±0.55 0.209±0.03
ENSMUST00000147286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000089680 ENSMUST00000159271 0.155±0.11 0.065±0.00 0.079±0.01 0.080±0.07 N/A 0.177±0.10 N/A 0.114±0.00 0.098±0.05 0.188±0.05 0.059±0.00 0.171±0.05 0.179±0.10 N/A

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