C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000VT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000170122-ENSG00000172785 CGP 9606 9:116231-179147
GeneTranscriptPositionBiotype
ENSG00000170122 (FOXD4)
forkhead box D4 		ENST00000382500 (FOXD4-001) 116231-118204 protein_coding

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0000VT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000204779-ENSG00000147996 CGP 9606 9:65282101-65734041
GeneTranscriptPositionBiotype
ENSG00000147996 (CBWD5)
COBW domain containing 5 		ENST00000377380 (CBWD5-013) 65675875-65682026 retained_intron
ENST00000377384 (CBWD5-012) 65675875-65682577 protein_coding
ENST00000377389 (CBWD5-011) 65675837-65733673 nonsense_mediated_decay
ENST00000377392 (CBWD5-201) 65675834-65734040 protein_coding
ENST00000377395 (CBWD5-026) 65675938-65733676 protein_coding
ENST00000382404 (CBWD5-003) 65675987-65701415 retained_intron
ENST00000382405 (CBWD5-001) 65675799-65734041 protein_coding
ENST00000429800 (CBWD5-023) 65675928-65733673 protein_coding
ENST00000430059 (CBWD5-008) 65675924-65733674 protein_coding
ENST00000441808 (CBWD5-004) 65668805-65681662 processed_transcript
ENST00000461932 (CBWD5-009) 65719385-65733994 retained_intron
ENST00000463075 (CBWD5-016) 65731336-65733672 retained_intron
ENST00000464913 (CBWD5-031) 65675941-65679212 processed_transcript
ENST00000465474 (CBWD5-024) 65675930-65732241 nonsense_mediated_decay
ENST00000468066 (CBWD5-007) 65708906-65733580 processed_transcript
ENST00000468198 (CBWD5-028) 65690967-65704923 retained_intron
ENST00000469921 (CBWD5-018) 65675858-65703471 nonsense_mediated_decay
ENST00000471620 (CBWD5-034) 65693393-65703303 retained_intron
ENST00000472916 (CBWD5-032) 65681615-65703014 processed_transcript
ENST00000476161 (CBWD5-019) 65675894-65732393 nonsense_mediated_decay
ENST00000476797 (CBWD5-027) 65688401-65733673 processed_transcript
ENST00000478650 (CBWD5-005) 65681574-65683342 retained_intron
ENST00000480229 (CBWD5-022) 65675906-65733859 nonsense_mediated_decay
ENST00000480819 (CBWD5-017) 65719955-65733671 retained_intron
ENST00000485088 (CBWD5-029) 65706433-65733992 retained_intron
ENST00000486191 (CBWD5-035) 65723084-65733647 processed_transcript
ENST00000486221 (CBWD5-025) 65675930-65733672 nonsense_mediated_decay
ENST00000486466 (CBWD5-030) 65675925-65679544 retained_intron
ENST00000489273 (CBWD5-037) 65700287-65733671 protein_coding
ENST00000491485 (CBWD5-038) 65732693-65733674 retained_intron
ENST00000495615 (CBWD5-036) 65693386-65701108 retained_intron
ENST00000496364 (CBWD5-033) 65690967-65708958 processed_transcript
ENST00000497250 (CBWD5-020) 65675896-65733670 nonsense_mediated_decay
ENSG00000204778 (RP11-15J10.1)
 ENST00000445695 (RP11-15J10.1-001) 65287914-65323015 unprocessed_pseudogene
ENSG00000204779 (FOXD4L5)
forkhead box D4-like 5 		ENST00000377420 (FOXD4L5-001) 65282101-65285209 protein_coding
ENSG00000280286 (ABC14-1080714F14.1)
 ENST00000623592 (ABC14-1080714F14.1-001) 65646982-65652679 unprocessed_pseudogene

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0000VT_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000273514-ENSG00000215126 CGP 9606 9:41126430-41199261
GeneTranscriptPositionBiotype
ENSG00000273514 (FOXD4L6)
forkhead box D4-like 6 		ENST00000622588 (FOXD4L6-001) 41126430-41128463 protein_coding

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0000VT_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000051490-ENSMUSG00000024878 CGP 10090 19:24898965-24961616
GeneTranscriptPositionBiotype
ENSMUSG00000024878 (Cbwd1)
COBW domain containing 1 		ENSMUST00000025815 (Cbwd1-201) 24919916-24961616 protein_coding
ENSMUSG00000051490 (Foxd4)
forkhead box D4 		ENSMUST00000058600 (Foxd4-201) 24898965-24901309 protein_coding
ENSMUSG00000095097 (Gm23658)
predicted gene, 23658 		ENSMUST00000083233 (Gm23658-201) 24942236-24942367 snoRNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000VT_0001ENSG00000170122ENST00000382500CIL_0000VT_0002ENSG00000147996ENST00000377380ENST00000377384ENST00000377389ENST00000377392ENST00000377395ENST00000382404ENST00000382405ENST00000429800ENST00000430059ENST00000441808ENST00000461932ENST00000463075ENST00000464913ENST00000465474ENST00000468066ENST00000468198ENST00000469921ENST00000471620ENST00000472916ENST00000476161ENST00000476797ENST00000478650ENST00000480229ENST00000480819ENST00000485088ENST00000486191ENST00000486221ENST00000486466ENST00000489273ENST00000491485ENST00000495615ENST00000496364ENST00000497250ENSG00000204778ENST00000445695ENSG00000204779ENST00000377420ENSG00000280286ENST00000623592CIL_0000VT_0003ENSG00000273514ENST00000622588CIL_0000VT_0004ENSMUSG00000024878ENSMUST00000025815ENSMUSG00000051490ENSMUST00000058600ENSMUSG00000095097ENSMUST00000083233
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000VT_0001ENSG00000170122ENST00000382500CIL_0000VT_0002ENSG00000147996ENST00000377380ENST00000377384ENST00000377392ENST00000377395ENST00000382404ENST00000429800ENST00000430059ENST00000461932ENST00000463075ENST00000464913ENST00000468066ENST00000468198ENST00000469921ENST00000478650ENST00000480229ENST00000480819ENST00000485088ENST00000486191ENST00000486466ENST00000489273ENST00000491485ENST00000495615ENST00000497250ENSG00000204778ENST00000445695ENSG00000204779ENST00000377420ENSG00000280286ENST00000623592CIL_0000VT_0003ENSG00000273514ENST00000622588CIL_0000VT_0004ENSMUSG00000024878ENSMUST00000025815ENSMUSG00000051490ENSMUST00000058600ENSMUSG00000095097ENSMUST00000083233
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000170122 ENST00000382500 0.066±0.00 N/A 0.077±0.00 0.109±0.00 0.014±0.00 0.030±0.00 N/A 0.057±0.00 0.025±0.00 0.089±0.00 N/A 0.141±0.05 0.101±0.04 0.509±0.46
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000147996 ENST00000377380 N/A N/A N/A N/A N/A N/A 0.356±0.00 4.185±0.00 1.603±0.00 3.364±0.00 N/A N/A 0.473±0.00 0.980±0.00
ENST00000377384 N/A N/A 0.924±0.00 1.353±0.00 2.679±0.00 1.695±0.00 0.169±0.08 N/A 0.239±0.00 N/A N/A N/A N/A N/A
ENST00000377389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000377392 N/A N/A N/A 0.352±0.00 N/A N/A N/A N/A N/A N/A N/A 0.324±0.00 N/A 0.095±0.00
ENST00000377395 N/A N/A N/A N/A N/A 0.161±0.00 0.151±0.00 2.004±0.00 N/A N/A N/A N/A N/A N/A
ENST00000382404 N/A N/A N/A 0.943±0.00 N/A 0.835±0.00 N/A 1.655±0.00 N/A N/A N/A 0.408±0.33 N/A N/A
ENST00000382405 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.156±0.00 N/A
ENST00000430059 0.471±0.00 N/A N/A N/A N/A N/A N/A N/A 0.428±0.00 N/A N/A N/A N/A N/A
ENST00000441808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461932 N/A N/A N/A N/A N/A 0.403±0.00 0.031±0.00 N/A N/A N/A N/A 0.368±0.00 0.064±0.00 N/A
ENST00000463075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.314±0.00
ENST00000464913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.586±0.00 N/A N/A N/A
ENST00000465474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.425±0.00 N/A
ENST00000468198 0.132±0.00 0.625±0.00 0.768±0.00 0.607±0.19 1.059±0.83 0.520±0.46 0.216±0.14 0.823±0.00 1.044±0.00 1.192±0.00 0.157±0.00 0.550±0.32 0.078±0.00 0.566±0.00
ENST00000469921 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.213±0.05 N/A
ENST00000471620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476797 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478650 N/A N/A N/A N/A N/A N/A 0.173±0.00 N/A N/A N/A N/A 3.382±0.00 N/A N/A
ENST00000480229 N/A 0.820±0.00 N/A N/A 0.468±0.00 N/A N/A N/A 0.266±0.00 N/A 0.062±0.00 N/A N/A N/A
ENST00000480819 N/A N/A N/A N/A N/A 0.429±0.00 N/A N/A N/A N/A N/A N/A N/A 1.329±0.00
ENST00000485088 0.083±0.00 0.362±0.00 N/A 0.395±0.18 0.684±0.50 0.234±0.18 0.113±0.06 0.275±0.00 0.324±0.23 0.696±0.00 0.025±0.00 0.520±0.35 0.091±0.03 0.481±0.00
ENST00000486191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.258±0.00 N/A N/A N/A
ENST00000486221 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486466 N/A N/A 2.802±0.00 N/A N/A N/A 0.795±0.00 N/A 2.503±0.00 1.823±0.00 N/A 3.928±0.00 N/A N/A
ENST00000489273 N/A N/A N/A N/A N/A 0.414±0.00 N/A N/A N/A N/A 0.294±0.00 0.536±0.00 N/A N/A
ENST00000491485 0.400±0.00 N/A N/A N/A 0.677±0.00 N/A N/A 1.816±0.00 N/A N/A N/A N/A 0.385±0.00 0.318±0.00
ENST00000495615 N/A N/A 1.685±0.00 N/A N/A N/A N/A N/A N/A 2.739±0.00 0.473±0.00 N/A N/A N/A
ENST00000496364 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497250 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.286±0.00 N/A
ENSG00000204778 ENST00000445695 N/A 0.016±0.00 0.151±0.00 0.108±0.00 0.113±0.07 0.104±0.00 N/A N/A 0.258±0.00 0.071±0.00 N/A 0.144±0.09 0.165±0.00 0.046±0.00
ENSG00000204779 ENST00000377420 N/A 0.071±0.00 N/A 0.127±0.08 0.102±0.00 N/A 0.028±0.00 0.177±0.00 0.016±0.00 0.104±0.07 0.068±0.00 0.084±0.05 0.047±0.01 0.117±0.04
ENSG00000280286 ENST00000623592 N/A 0.062±0.00 N/A 0.028±0.00 N/A 0.082±0.00 N/A N/A 0.028±0.00 N/A N/A 0.023±0.00 0.027±0.00 0.048±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000273514 ENST00000622588 N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024878 ENSMUST00000025815 1.630±0.42 2.430±0.96 3.113±0.56 2.469±0.65 1.374±0.38 0.943±0.56 1.330±0.32 1.833±0.35 2.309±1.63 1.343±0.41 3.676±0.33 1.865±1.34 9.100±3.50 4.937±1.56
ENSMUSG00000051490 ENSMUST00000058600 0.009±0.00 0.026±0.00 N/A 0.089±0.05 N/A N/A 0.015±0.00 N/A 0.054±0.05 0.073±0.04 N/A 0.028±0.00 0.018±0.01 0.162±0.08
ENSMUSG00000095097 ENSMUST00000083233 N/A N/A N/A N/A N/A N/A N/A N/A 1.904±0.00 N/A N/A N/A N/A N/A

Loading