C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box D4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382500 FOXD4-001 ENSG00000170122 9606 - 9:116231-118204 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000382500
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000382500 0.066±0.00 0.077±0.00 0.109±0.00 0.014±0.00 0.030±0.00 0.057±0.00 0.025±0.00 0.089±0.00 0.141±0.05 0.101±0.04 0.509±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AF CIL_0009AF_0001 VISTA 9:-140343-460780
CIL_0000VT CIL_0000VT_0001 CGP 9:116231-179147

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 TAS:IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008301 ISS DNA binding, bending
GO:0043565 ISS:IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000058600 Foxd4-201 protein_coding Mus_musculus 0 579
ENSMUST00000087285 Foxd3-001 protein_coding Mus_musculus 0 337
ENSMUST00000105098 Foxd1-001 protein_coding Mus_musculus 0 298
ENSDART00000077753 foxc1b-001 protein_coding Danio_rerio 0.0001 53

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