C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000Z8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000030514-ENSDARG00000056400 CGP 7955 1:16279346-16336940
GeneTranscriptPositionBiotype
ENSDARG00000030514 (acsl1a)
acyl-CoA synthetase long-chain family member 1a 		ENSDART00000039917 (acsl1a-001) 16279346-16329447 protein_coding
ENSDART00000125125 (acsl1a-201) 16280826-16311688 protein_coding
ENSDART00000131293 (acsl1a-002) 16285436-16289162 processed_transcript
ENSDART00000146946 (acsl1a-003) 16297839-16311908 protein_coding
ENSDARG00000056400 (helt)
hey-like transcription factor 		ENSDART00000078889 (helt-001) 16335287-16336940 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000Z8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000151726-ENSG00000187821 CGP 9606 4:184755595-185020804
GeneTranscriptPositionBiotype
ENSG00000151726 (ACSL1)
acyl-CoA synthetase long-chain family member 1 		ENST00000281455 (ACSL1-001) 184755601-184826094 protein_coding
ENST00000454703 (ACSL1-005) 184755595-184826119 protein_coding
ENST00000503407 (ACSL1-009) 184755601-184766702 protein_coding
ENST00000504342 (ACSL1-002) 184757021-184812259 protein_coding
ENST00000504900 (ACSL1-004) 184768030-184826052 protein_coding
ENST00000505492 (ACSL1-008) 184768328-184773873 protein_coding
ENST00000506733 (ACSL1-003) 184756903-184808451 nonsense_mediated_decay
ENST00000507295 (ACSL1-006) 184756781-184826034 protein_coding
ENST00000513001 (ACSL1-010) 184755600-184758876 retained_intron
ENST00000513317 (ACSL1-007) 184757047-184805788 protein_coding
ENST00000515030 (ACSL1-011) 184755600-184826818 protein_coding
ENST00000622937 (ACSL1-201) 184755596-184808601 protein_coding
ENSG00000187821 (HELT)
helt bHLH transcription factor 		ENST00000338875 (HELT-004) 185018929-185020772 protein_coding
ENST00000505610 (HELT-001) 185018841-185020804 protein_coding
ENST00000513599 (HELT-003) 185018841-185020802 retained_intron
ENST00000515777 (HELT-002) 185018841-185020796 protein_coding
ENSG00000248517 (RP11-386B13.4)
 ENST00000505053 (RP11-386B13.4-001) 184988997-185005186 lincRNA
ENSG00000249138 (SLED1)
proteoglycan 3 pseudogene 		ENST00000506741 (SLED1-002) 184798296-184799046 processed_transcript
ENST00000512051 (SLED1-001) 184798512-184798891 transcribed_processed_pseudogene
ENSG00000249173 (LINC01093)
long intergenic non-protein coding RNA 1093 		ENST00000506479 (LINC01093-001) 184893871-184898764 lincRNA
ENST00000507183 (LINC01093-002) 184893901-184899454 lincRNA
ENST00000515864 (LINC01093-003) 184893905-184899451 lincRNA
ENSG00000251139 (RP11-701P16.2)
 ENST00000508020 (RP11-701P16.2-001) 184813619-184821300 antisense
ENSG00000251147 (RP11-701P16.3)
 ENST00000503355 (RP11-701P16.3-001) 184910889-184911352 processed_pseudogene
ENSG00000251230 (RP11-701P16.5)
 ENST00000510284 (RP11-701P16.5-002) 184846278-184855682 lincRNA
ENST00000511703 (RP11-701P16.5-001) 184844585-184855751 lincRNA
ENSG00000266698 (MIR3945)
microRNA 3945 		ENST00000581853 (MIR3945-201) 184851013-184851110 miRNA
ENSG00000279460 (RP11-517M22.1)
 ENST00000623949 (RP11-517M22.1-001) 184984277-184988127 TEC

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000Z8_0001ENSDARG00000030514ENSDART00000039917ENSDART00000125125ENSDART00000131293ENSDART00000146946ENSDARG00000056400ENSDART00000078889CIL_0000Z8_0002ENSG00000151726ENST00000281455ENST00000454703ENST00000503407ENST00000504342ENST00000504900ENST00000505492ENST00000506733ENST00000507295ENST00000513001ENST00000513317ENST00000515030ENST00000622937ENSG00000187821ENST00000338875ENST00000505610ENST00000513599ENST00000515777ENSG00000248517ENST00000505053ENSG00000249138ENST00000506741ENST00000512051ENSG00000249173ENST00000506479ENST00000507183ENST00000515864ENSG00000251139ENST00000508020ENSG00000251147ENST00000503355ENSG00000251230ENST00000510284ENST00000511703ENSG00000266698ENST00000581853ENSG00000279460ENST00000623949
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000Z8_0001ENSDARG00000030514ENSDART00000039917ENSDART00000125125ENSDART00000131293ENSDARG00000056400ENSDART00000078889CIL_0000Z8_0002ENSG00000151726ENST00000281455ENST00000454703ENST00000503407ENST00000504342ENST00000507295ENST00000513317ENSG00000187821ENST00000338875ENST00000505610ENST00000513599ENST00000515777ENSG00000248517ENST00000505053ENSG00000249138ENST00000506741ENST00000512051ENSG00000249173ENST00000506479ENST00000507183ENST00000515864ENSG00000251139ENST00000508020ENSG00000251147ENST00000503355ENSG00000251230ENST00000510284ENST00000511703ENSG00000266698ENST00000581853ENSG00000279460ENST00000623949
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000030514 ENSDART00000039917 N/A N/A N/A 6.924±1.93 N/A N/A 11.926±1.29 1.438±0.48 0.071±0.00 N/A 3.025±0.00 N/A N/A N/A
ENSDART00000125125 N/A N/A N/A 1.951±0.00 N/A N/A 9.798±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000131293 N/A N/A N/A N/A N/A N/A N/A N/A 0.072±0.00 N/A N/A N/A N/A N/A
ENSDART00000146946 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000056400 ENSDART00000078889 N/A N/A N/A 0.487±0.24 N/A N/A 0.054±0.00 0.364±0.00 N/A N/A 0.741±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000151726 ENST00000281455 98.619±0.00 3.997±0.00 1.897±0.00 8.179±0.00 119.664±115.71 5.748±2.52 47.374±39.87 45.710±11.61 121.064±111.83 12.786±0.00 38.921±32.32 4.134±2.29 3.750±1.30 4.671±0.00
ENST00000454703 N/A 2.524±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.472±0.00 3.567±1.50 N/A
ENST00000503407 85.137±0.00 5.897±0.00 N/A 17.799±0.00 131.340±0.00 9.476±0.00 12.318±6.88 74.793±0.00 238.753±0.00 15.290±0.00 12.289±0.00 5.428±1.63 2.506±0.00 15.693±0.00
ENST00000504342 N/A N/A 5.078±0.00 1.414±0.00 5.174±0.00 4.642±0.00 10.409±0.00 47.548±0.00 9.856±0.00 6.439±0.00 20.805±0.00 2.701±0.00 N/A 33.552±18.49
ENST00000504900 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507295 N/A N/A N/A 4.557±3.63 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.025±0.00 3.638±0.00 N/A
ENST00000515030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000187821 ENST00000338875 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.122±0.00 N/A N/A N/A 0.065±0.00
ENST00000505610 N/A N/A N/A 0.031±0.00 N/A N/A N/A N/A N/A 0.596±0.00 N/A N/A N/A 0.106±0.00
ENST00000513599 N/A N/A N/A N/A N/A N/A N/A 0.211±0.00 N/A N/A N/A N/A N/A N/A
ENST00000515777 N/A N/A N/A 0.027±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.093±0.00
ENSG00000248517 ENST00000505053 N/A N/A N/A N/A N/A N/A N/A 3.157±0.00 0.051±0.00 N/A N/A N/A N/A 0.061±0.00
ENSG00000249138 ENST00000506741 0.097±0.00 0.121±0.00 0.315±0.00 0.253±0.00 0.237±0.10 0.391±0.31 0.292±0.27 2.346±0.00 1.047±0.99 1.177±0.49 4.036±0.00 0.636±0.61 0.188±0.10 0.134±0.05
ENST00000512051 N/A N/A N/A N/A N/A 0.032±0.00 N/A 0.122±0.00 0.107±0.00 N/A 0.451±0.00 N/A N/A 0.137±0.00
ENSG00000249173 ENST00000506479 N/A N/A N/A N/A 0.219±0.00 N/A 0.025±0.00 0.161±0.00 N/A N/A N/A N/A N/A N/A
ENST00000507183 0.053±0.00 N/A N/A N/A 0.096±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515864 N/A N/A N/A N/A 0.108±0.00 N/A N/A N/A N/A 0.159±0.00 N/A N/A N/A 0.026±0.00
ENSG00000251139 ENST00000508020 0.265±0.00 0.208±0.00 N/A 0.054±0.00 0.187±0.00 N/A N/A 0.236±0.18 0.230±0.16 0.242±0.09 0.774±0.57 0.271±0.00 0.176±0.08 0.179±0.11
ENSG00000251147 ENST00000503355 N/A N/A N/A N/A N/A N/A N/A 1.747±0.00 0.161±0.00 N/A N/A N/A N/A N/A
ENSG00000251230 ENST00000510284 N/A N/A N/A N/A N/A 0.066±0.00 N/A N/A N/A N/A 0.029±0.00 0.406±0.00 0.308±0.00 1.601±0.00
ENST00000511703 N/A 0.201±0.00 N/A 0.094±0.00 0.287±0.17 0.084±0.00 0.091±0.03 0.248±0.00 0.118±0.00 1.305±0.38 N/A 0.031±0.00 0.082±0.00 0.241±0.00
ENSG00000266698 ENST00000581853 N/A N/A N/A N/A 0.675±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.742±0.00
ENSG00000279460 ENST00000623949 N/A N/A 1.021±0.00 N/A 0.003±0.00 N/A N/A 0.130±0.10 0.003±0.00 0.136±0.00 N/A N/A N/A 0.054±0.00

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