C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: acyl-CoA synthetase long-chain family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000504342 ACSL1-002 ENSG00000151726 9606 - 4:184757021-184812259 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000504342
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000504342 5.078±0.00 1.414±0.00 5.174±0.00 4.642±0.00 10.409±0.00 47.548±0.00 9.856±0.00 6.439±0.00 20.805±0.00 2.701±0.00 33.552±18.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Z8 CIL_0000Z8_0002 CGP 4:184755595-185020804

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001676 IDA long-chain fatty acid metabolic process
GO:0003824 IEA catalytic activity
GO:0004467 IDA long-chain fatty acid-CoA ligase activity
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0005741 TAS mitochondrial outer membrane
GO:0005789 TAS endoplasmic reticulum membrane
GO:0008152 IEA metabolic process
GO:0008610 IDA lipid biosynthetic process
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0019432 TAS triglyceride biosynthetic process
GO:0033559 TAS unsaturated fatty acid metabolic process
GO:0035338 TAS long-chain fatty-acyl-CoA biosynthetic process
GO:0036109 TAS alpha-linolenic acid metabolic process
GO:0043651 TAS linoleic acid metabolic process
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0044539 IDA long-chain fatty acid import

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110372 Acsl1-002 protein_coding Mus_musculus 0 2254
ENSMUST00000034046 Acsl1-001 protein_coding Mus_musculus 0 2254
ENSMUST00000110371 Acsl1-005 protein_coding Mus_musculus 0 2091
ENSMUST00000128746 Acsl1-003 retained_intron Mus_musculus 0 438
ENSMUST00000152423 Acsl1-004 protein_coding Mus_musculus 0 425
ENSMUST00000135955 Acsl1-007 protein_coding Mus_musculus 0 390
ENSMUST00000130563 Acsl1-006 protein_coding Mus_musculus 0 248

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