C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000105_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000017772-ENSDARG00000005578 CGP 7955 1:51478230-51524949
GeneTranscriptPositionBiotype
ENSDARG00000005578 (ugp2a)
UDP-glucose pyrophosphorylase 2a 		ENSDART00000010449 (ugp2a-001) 51506478-51524949 protein_coding
ENSDARG00000017772 (mdh1aa)
malate dehydrogenase 1Aa, NAD (soluble) 		ENSDART00000012842 (mdh1aa-201) 51486408-51500202 protein_coding
ENSDART00000022290 (mdh1aa-001) 51486297-51500208 protein_coding
ENSDART00000039968 (mdh1aa-003) 51486876-51493261 retained_intron
ENSDART00000140657 (mdh1aa-004) 51496857-51497496 protein_coding
ENSDART00000140982 (mdh1aa-002) 51486398-51487319 protein_coding
ENSDART00000150353 (mdh1aa-005) 51478230-51493177 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_000105_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000014641-ENSG00000169764 CGP 9606 2:63588609-63891562
GeneTranscriptPositionBiotype
ENSG00000014641 (MDH1)
malate dehydrogenase 1, NAD (soluble) 		ENST00000233114 (MDH1-001) 63588609-63607197 protein_coding
ENST00000409476 (MDH1-011) 63588973-63607091 protein_coding
ENST00000409908 (MDH1-010) 63588958-63607091 protein_coding
ENST00000421012 (MDH1-009) 63589325-63604810 nonsense_mediated_decay
ENST00000432309 (MDH1-003) 63589151-63604810 protein_coding
ENST00000436321 (MDH1-004) 63588982-63599288 protein_coding
ENST00000442225 (MDH1-006) 63588963-63595519 protein_coding
ENST00000454035 (MDH1-007) 63588997-63597538 protein_coding
ENST00000462944 (MDH1-005) 63588985-63590974 processed_transcript
ENST00000472098 (MDH1-002) 63588998-63598186 retained_intron
ENST00000484538 (MDH1-013) 63597548-63600052 retained_intron
ENST00000485155 (MDH1-008) 63588979-63594990 retained_intron
ENST00000485781 (MDH1-012) 63588609-63597657 retained_intron
ENST00000495083 (MDH1-014) 63605810-63607194 retained_intron
ENST00000539945 (MDH1-201) 63589151-63607194 protein_coding
ENST00000544381 (MDH1-202) 63589151-63607194 protein_coding
ENSG00000169764 (UGP2)
UDP-glucose pyrophosphorylase 2 		ENST00000337130 (UGP2-001) 63841710-63891562 protein_coding
ENST00000394417 (UGP2-002) 63840940-63891562 protein_coding
ENST00000445915 (UGP2-004) 63842325-63891561 protein_coding
ENST00000465515 (UGP2-034) 63855909-63857971 retained_intron
ENST00000466642 (UGP2-013) 63840952-63884110 nonsense_mediated_decay
ENST00000467400 (UGP2-017) 63841043-63882607 nonsense_mediated_decay
ENST00000467648 (UGP2-005) 63840969-63891451 protein_coding
ENST00000467999 (UGP2-028) 63842416-63884032 nonsense_mediated_decay
ENST00000472047 (UGP2-030) 63854845-63884003 protein_coding
ENST00000475462 (UGP2-023) 63842438-63884063 protein_coding
ENST00000475550 (UGP2-003) 63841851-63891562 retained_intron
ENST00000480679 (UGP2-012) 63840994-63856433 protein_coding
ENST00000482668 (UGP2-011) 63840969-63882557 protein_coding
ENST00000483108 (UGP2-014) 63841004-63882503 nonsense_mediated_decay
ENST00000483461 (UGP2-019) 63840993-63882720 retained_intron
ENST00000484056 (UGP2-035) 63841857-63857618 processed_transcript
ENST00000484142 (UGP2-009) 63840954-63856433 protein_coding
ENST00000487042 (UGP2-024) 63842441-63885721 nonsense_mediated_decay
ENST00000487469 (UGP2-020) 63841008-63886512 processed_transcript
ENST00000487640 (UGP2-016) 63841132-63862900 nonsense_mediated_decay
ENST00000488245 (UGP2-021) 63841902-63882649 protein_coding
ENST00000491621 (UGP2-029) 63846074-63885684 protein_coding
ENST00000493222 (UGP2-015) 63841010-63882606 nonsense_mediated_decay
ENST00000494536 (UGP2-031) 63856254-63882758 retained_intron
ENST00000495020 (UGP2-032) 63856764-63884018 processed_transcript
ENST00000496334 (UGP2-022) 63842381-63883984 nonsense_mediated_decay
ENST00000497510 (UGP2-018) 63840971-63882601 nonsense_mediated_decay
ENST00000497883 (UGP2-025) 63842106-63884067 protein_coding
ENST00000613823 (UGP2-201) 63855419-63891558 protein_coding
ENSG00000228305 (AC016734.2)
 ENST00000436998 (AC016734.2-001) 63622178-63622831 processed_pseudogene
ENSG00000228872 (AC096664.2)
 ENST00000393996 (AC096664.2-001) 63717122-63717899 processed_pseudogene
ENSG00000229221 (HNRNPA1P66)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 66 		ENST00000416539 (HNRNPA1P66-001) 63751697-63752630 processed_pseudogene
ENSG00000229920 (RPS4XP5)
ribosomal protein S4X pseudogene 5 		ENST00000419038 (RPS4XP5-001) 63643271-63644038 transcribed_processed_pseudogene
ENST00000449995 (RPS4XP5-002) 63642455-63643788 processed_transcript
ENSG00000234488 (AC096664.1)
 ENST00000411843 (AC096664.1-001) 63684305-63684710 processed_pseudogene
ENSG00000251775 (ACA59)
Small nucleolar RNA ACA59 		ENST00000515966 (ACA59.1-201) 63883249-63883391 snoRNA

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000105_0001ENSDARG00000005578ENSDART00000010449ENSDARG00000017772ENSDART00000012842ENSDART00000022290ENSDART00000039968ENSDART00000140657ENSDART00000140982ENSDART00000150353CIL_000105_0002ENSG00000014641ENST00000233114ENST00000409476ENST00000409908ENST00000421012ENST00000432309ENST00000436321ENST00000442225ENST00000454035ENST00000462944ENST00000472098ENST00000484538ENST00000485155ENST00000485781ENST00000495083ENST00000539945ENST00000544381ENSG00000169764ENST00000337130ENST00000394417ENST00000445915ENST00000465515ENST00000466642ENST00000467400ENST00000467648ENST00000467999ENST00000472047ENST00000475462ENST00000475550ENST00000480679ENST00000482668ENST00000483108ENST00000483461ENST00000484056ENST00000484142ENST00000487042ENST00000487469ENST00000487640ENST00000488245ENST00000491621ENST00000493222ENST00000494536ENST00000495020ENST00000496334ENST00000497510ENST00000497883ENST00000613823ENSG00000228305ENST00000436998ENSG00000228872ENST00000393996ENSG00000229221ENST00000416539ENSG00000229920ENST00000419038ENST00000449995ENSG00000234488ENST00000411843ENSG00000251775ENST00000515966
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000105_0001ENSDARG00000005578ENSDART00000010449ENSDARG00000017772ENSDART00000012842ENSDART00000022290ENSDART00000039968ENSDART00000140657CIL_000105_0002ENSG00000014641ENST00000233114ENST00000409476ENST00000409908ENST00000432309ENST00000539945ENSG00000169764ENST00000337130ENST00000394417ENST00000445915ENST00000467648ENST00000475550ENST00000613823ENSG00000228305ENST00000436998ENSG00000228872ENST00000393996ENSG00000229221ENST00000416539ENSG00000229920ENST00000419038ENST00000449995ENSG00000234488ENST00000411843ENSG00000251775ENST00000515966
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000005578 ENSDART00000010449 N/A N/A N/A 0.727±0.55 N/A N/A 21.271±1.99 9.172±0.00 15.637±0.00 N/A 22.155±0.00 N/A N/A N/A
ENSDARG00000017772 ENSDART00000012842 N/A N/A N/A 229.487±148.41 N/A N/A 453.279±337.49 34.106±36.26 340.386±0.00 N/A 81.716±0.00 N/A N/A N/A
ENSDART00000022290 N/A N/A N/A 46.769±0.00 N/A N/A 114.751±0.00 N/A 35.601±0.00 N/A 11.750±0.00 N/A N/A N/A
ENSDART00000039968 N/A N/A N/A N/A N/A N/A 1.564±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000140657 N/A N/A N/A N/A N/A N/A N/A 0.432±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000140982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000150353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000014641 ENST00000233114 10.346±0.00 9.686±0.00 N/A 87.301±17.22 28.665±15.94 14.882±2.91 109.342±45.50 21.335±7.95 16.675±0.85 7.531±1.98 31.080±19.28 18.768±10.00 10.689±1.52 17.156±9.17
ENST00000409476 12.858±0.00 26.373±0.00 N/A 77.351±0.00 43.637±0.00 27.373±0.00 195.350±0.00 63.129±0.00 30.532±0.00 19.426±0.00 17.773±0.00 50.879±0.00 33.883±0.00 28.328±3.77
ENST00000409908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 38.707±0.00 20.813±7.06 12.390±0.00
ENST00000421012 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432309 N/A N/A N/A 44.975±0.00 N/A N/A 30.555±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000436321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539945 5.995±0.00 18.064±0.00 11.327±0.00 42.763±0.00 34.693±0.00 10.036±0.00 130.164±0.00 47.381±0.00 16.591±0.00 14.486±0.00 7.322±0.00 33.706±0.00 29.219±0.21 N/A
ENST00000544381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169764 ENST00000337130 N/A N/A 2.208±0.00 3.050±0.00 9.883±0.00 17.968±0.00 10.946±3.88 135.314±0.00 10.415±3.07 6.047±1.43 7.837±0.35 6.931±1.77 16.473±2.59 N/A
ENST00000394417 56.386±0.00 35.954±0.00 5.034±0.00 46.818±34.73 34.405±24.18 44.810±30.00 28.294±21.15 45.436±0.00 17.383±1.28 20.338±12.94 27.388±11.77 17.255±13.64 11.644±2.36 26.692±23.64
ENST00000445915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.828±0.00 N/A N/A N/A
ENST00000465515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466642 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467648 N/A N/A N/A N/A N/A N/A 17.671±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000467999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475462 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475550 N/A N/A N/A N/A N/A 2.442±0.00 N/A N/A N/A 1.581±0.00 N/A 1.882±0.00 N/A 2.123±0.00
ENST00000480679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483108 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484142 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488245 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497510 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613823 N/A N/A N/A 9.127±0.00 73.613±0.00 N/A N/A 24.272±0.00 27.759±0.00 2.829±0.00 11.539±0.47 17.006±8.01 32.764±5.70 9.529±0.00
ENSG00000228305 ENST00000436998 0.087±0.00 0.124±0.00 0.095±0.00 N/A 0.090±0.01 N/A N/A 0.902±0.87 0.167±0.00 0.092±0.00 N/A 0.116±0.00 0.241±0.00 0.273±0.19
ENSG00000228872 ENST00000393996 N/A N/A N/A N/A 0.056±0.00 N/A 0.500±0.00 N/A N/A N/A 0.811±0.00 0.065±0.00 0.058±0.00 0.051±0.00
ENSG00000229221 ENST00000416539 0.066±0.00 0.028±0.00 N/A 0.042±0.00 0.473±0.07 N/A 0.136±0.01 0.508±0.39 0.025±0.00 N/A 0.244±0.04 0.015±0.00 0.040±0.00 0.150±0.13
ENSG00000229920 ENST00000419038 N/A N/A 0.171±0.00 N/A 0.290±0.00 0.014±0.00 0.032±0.00 0.410±0.00 0.079±0.00 N/A 0.013±0.00 N/A N/A 0.162±0.00
ENST00000449995 0.036±0.00 0.088±0.00 0.191±0.00 0.042±0.00 0.525±0.11 0.081±0.00 0.025±0.00 0.588±0.51 N/A 0.050±0.00 0.191±0.00 0.016±0.00 0.053±0.00 0.137±0.12
ENSG00000234488 ENST00000411843 0.038±0.00 0.080±0.00 N/A N/A 0.040±0.00 0.037±0.00 0.096±0.00 N/A 0.143±0.00 N/A 0.388±0.00 0.106±0.00 N/A 0.179±0.00
ENSG00000251775 ENST00000515966 N/A 0.376±0.00 N/A 8.941±8.81 0.582±0.00 N/A 0.331±0.00 1.032±0.00 N/A N/A 4.584±0.00 0.532±0.00 N/A N/A

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