C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S4X pseudogene 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000419038 RPS4XP5-001 ENSG00000229920 9606 - 2:63643271-63644038 transcribed_processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverMuscleTestisENST00000419038
Transcript ID Bladder Breast Colon Heart Kidney Liver Muscle Testis
ENST00000419038 0.171±0.00 0.290±0.00 0.014±0.00 0.032±0.00 0.410±0.00 0.079±0.00 0.013±0.00 0.162±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000100 CIL_000100_0002 CGP 2:63050057-63827843
CIL_000105 CIL_000105_0002 CGP 2:63588609-63891562

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033683 Rps4x-001 protein_coding Mus_musculus 0 763
ENSMUST00000119790 Gm13680-001 processed_pseudogene Mus_musculus 0 743
ENSMUST00000165198 Gm9294-001 processed_pseudogene Mus_musculus 0 730
ENSMUST00000183728 Gm15013-002 protein_coding Mus_musculus 0 678
ENSMUST00000183537 Gm15013-001 translated_processed_pseudogene Mus_musculus 0 678
ENSMUST00000121609 Gm12267-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000119465 Gm12757-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000152739 Rps4x-002 retained_intron Mus_musculus 8.00141e-43 178

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