C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM and senescent cell antigen-like domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393310 LIMS1-001 ENSG00000169756 9606 + 2:108588466-108687246 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastOvaryPlacentaENST00000393310
Transcript ID Brain Breast Ovary Placenta
ENST00000393310 0.735±0.00 1.664±0.00 1.356±0.11 1.214±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RA CIL_0007RA_0001 VISTA 2:108335931-108937600
CIL_00010T CIL_00010T_0001 CGP 2:108448561-108687246
CIL_00010W CIL_00010W_0001 CGP 2:108534355-108785811

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0005911 IMP cell-cell junction
GO:0005925 IDA focal adhesion
GO:0007569 TAS cell aging
GO:0008270 IDA:IEA zinc ion binding
GO:0010628 IMP positive regulation of gene expression
GO:0010811 IMP positive regulation of cell-substrate adhesion
GO:0019901 IPI protein kinase binding
GO:0034329 TAS cell junction assembly
GO:0043547 IMP positive regulation of GTPase activity
GO:0045184 IMP establishment of protein localization
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051894 IMP positive regulation of focal adhesion assembly
GO:0071560 IEP cellular response to transforming growth factor beta stimulus
GO:1900026 IMP positive regulation of substrate adhesion-dependent cell spreading

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020078 Lims1-001 protein_coding Mus_musculus 0 1312
ENSMUST00000105468 Lims1-003 protein_coding Mus_musculus 0 1310
ENSMUST00000020077 Lims1-002 protein_coding Mus_musculus 0 1160
ENSMUST00000148799 Lims1-005 processed_transcript Mus_musculus 2.94273e-44 185

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