C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00012M_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000221947-ENSG00000104313 CGP 9606 8:70669365-71362232
GeneTranscriptPositionBiotype
ENSG00000104313 (EYA1)
EYA transcriptional coactivator and phosphatase 1 		ENST00000303824 (EYA1-010) 71197439-71361860 protein_coding
ENST00000340726 (EYA1-001) 71197433-71362232 protein_coding
ENST00000388740 (EYA1-201) 71197435-71356689 protein_coding
ENST00000388741 (EYA1-012) 71198128-71362136 protein_coding
ENST00000388742 (EYA1-002) 71197433-71356678 protein_coding
ENST00000388743 (EYA1-011) 71199069-71356609 protein_coding
ENST00000419131 (EYA1-005) 71199320-71356486 protein_coding
ENST00000422295 (EYA1-007) 71317659-71322461 retained_intron
ENST00000465115 (EYA1-003) 71197433-71361731 nonsense_mediated_decay
ENST00000493349 (EYA1-008) 71215495-71299108 nonsense_mediated_decay
ENST00000496494 (EYA1-004) 71199241-71356633 retained_intron
ENSG00000221947 (XKR9)
XK, Kell blood group complex subunit-related family, member 9 		ENST00000408926 (XKR9-001) 70669365-70735942 protein_coding
ENST00000519350 (XKR9-004) 70670573-70681325 protein_coding
ENST00000520030 (XKR9-005) 70669398-70734490 protein_coding
ENST00000520092 (XKR9-003) 70669365-70734491 nonsense_mediated_decay
ENST00000520273 (XKR9-002) 70669408-70790371 processed_transcript
ENSG00000223220 (Y_RNA)
Y RNA 		ENST00000411288 (Y_RNA.1-828) 70780914-70781008 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_00012M_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000067813-ENSMUSG00000025932 CGP 10090 1:13668771-14310235
GeneTranscriptPositionBiotype
ENSMUSG00000025932 (Eya1)
eyes absent 1 homolog (Drosophila) 		ENSMUST00000027066 (Eya1-201) 14168954-14310200 protein_coding
ENSMUST00000080664 (Eya1-002) 14169666-14310119 protein_coding
ENSMUST00000168081 (Eya1-001) 14168958-14310235 protein_coding
ENSMUST00000185329 (Eya1-003) 14301204-14310051 retained_intron
ENSMUST00000185453 (Eya1-006) 14270707-14304628 protein_coding
ENSMUST00000187790 (Eya1-005) 14270775-14309836 protein_coding
ENSMUST00000188857 (Eya1-007) 14252600-14304619 protein_coding
ENSMUST00000189526 (Eya1-008) 14207926-14231492 protein_coding
ENSMUST00000190337 (Eya1-004) 14170643-14304570 protein_coding
ENSMUSG00000067813 (Xkr9)
X Kell blood group precursor related family member 9 homolog 		ENSMUST00000088542 (Xkr9-001) 13668771-13701723 protein_coding
ENSMUSG00000097711 (Gm5523)
predicted pseudogene 5523 		ENSMUST00000180415 (Gm5523-001) 13785883-13786879 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00012M_0001ENSG00000104313ENST00000303824ENST00000340726ENST00000388740ENST00000388741ENST00000388742ENST00000388743ENST00000419131ENST00000422295ENST00000465115ENST00000493349ENST00000496494ENSG00000221947ENST00000408926ENST00000519350ENST00000520030ENST00000520092ENST00000520273ENSG00000223220ENST00000411288CIL_00012M_0002ENSMUSG00000025932ENSMUST00000027066ENSMUST00000080664ENSMUST00000168081ENSMUST00000185329ENSMUST00000185453ENSMUST00000187790ENSMUST00000188857ENSMUST00000189526ENSMUST00000190337ENSMUSG00000067813ENSMUST00000088542ENSMUSG00000097711ENSMUST00000180415
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00012M_0001ENSG00000104313ENST00000303824ENST00000388740ENST00000388741ENST00000388742ENST00000388743ENST00000419131ENST00000422295ENST00000465115ENST00000493349ENST00000496494ENSG00000221947ENST00000408926ENST00000519350ENST00000520030ENST00000520092ENSG00000223220ENST00000411288CIL_00012M_0002ENSMUSG00000025932ENSMUST00000027066ENSMUST00000080664ENSMUST00000168081ENSMUST00000185329ENSMUST00000185453ENSMUST00000187790ENSMUST00000188857ENSMUST00000189526ENSMUST00000190337ENSMUSG00000067813ENSMUST00000088542ENSMUSG00000097711ENSMUST00000180415
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104313 ENST00000303824 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.124±0.00
ENST00000340726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000388740 N/A N/A N/A 0.348±0.00 0.096±0.00 N/A N/A N/A N/A N/A N/A N/A 0.047±0.00 N/A
ENST00000388741 0.031±0.00 N/A N/A N/A 0.116±0.00 0.031±0.00 N/A 0.050±0.00 0.649±0.00 0.329±0.00 N/A 0.022±0.00 N/A 0.243±0.00
ENST00000388742 N/A N/A N/A 0.232±0.00 N/A N/A 1.960±0.00 N/A N/A N/A N/A 0.102±0.00 N/A N/A
ENST00000388743 N/A N/A N/A 0.410±0.10 N/A 0.140±0.12 0.998±0.09 N/A 0.411±0.39 N/A 0.470±0.00 0.103±0.00 0.018±0.00 0.754±0.00
ENST00000419131 N/A N/A N/A 1.156±0.00 N/A 0.087±0.00 0.813±0.00 N/A 1.715±0.00 0.299±0.11 N/A N/A 0.039±0.02 N/A
ENST00000422295 N/A N/A 1.754±0.00 N/A N/A 1.043±0.00 N/A N/A N/A N/A N/A N/A 0.218±0.00 N/A
ENST00000465115 N/A N/A N/A 0.362±0.00 0.265±0.00 N/A N/A N/A N/A 0.379±0.00 0.617±0.31 N/A 0.012±0.00 0.290±0.00
ENST00000493349 0.110±0.00 0.017±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496494 N/A N/A N/A N/A N/A N/A 0.531±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000221947 ENST00000408926 0.055±0.00 0.261±0.00 0.266±0.00 0.561±0.00 0.091±0.00 0.163±0.09 0.144±0.00 0.105±0.00 0.116±0.00 0.190±0.00 0.039±0.03 0.260±0.23 0.049±0.01 0.682±0.40
ENST00000519350 N/A N/A N/A N/A N/A N/A N/A N/A 0.269±0.00 N/A N/A N/A N/A N/A
ENST00000520030 N/A N/A N/A N/A N/A N/A N/A 0.780±0.00 0.277±0.00 0.072±0.00 N/A 0.037±0.00 N/A 1.117±0.00
ENST00000520092 0.044±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.223±0.00 0.045±0.00 N/A 2.131±0.62
ENST00000520273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223220 ENST00000411288 N/A N/A N/A 0.220±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025932 ENSMUST00000027066 0.106±0.00 0.294±0.00 0.375±0.09 0.196±0.06 0.217±0.02 0.235±0.15 N/A 0.078±0.02 0.008±0.01 0.293±0.07 N/A 0.202±0.09 0.015±0.00 N/A
ENSMUST00000080664 0.176±0.07 0.279±0.08 N/A 0.316±0.04 0.144±0.09 0.070±0.02 0.124±0.00 0.038±0.00 0.010±0.00 N/A N/A 0.139±0.06 0.017±0.00 0.144±0.00
ENSMUST00000168081 0.103±0.03 0.708±0.19 0.150±0.00 N/A 0.071±0.00 0.201±0.00 0.139±0.06 N/A 0.003±0.00 N/A 1.057±0.00 0.238±0.09 0.033±0.00 0.118±0.00
ENSMUST00000185329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.188±0.00 N/A N/A
ENSMUST00000185453 N/A N/A N/A N/A N/A 0.115±0.03 N/A 0.267±0.11 0.024±0.00 N/A N/A N/A N/A N/A
ENSMUST00000187790 0.550±0.00 N/A N/A N/A N/A N/A N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A
ENSMUST00000188857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.793±0.00 N/A N/A
ENSMUST00000189526 N/A N/A N/A N/A N/A N/A N/A N/A 0.045±0.00 N/A N/A N/A 0.629±0.00 N/A
ENSMUST00000190337 0.317±0.05 0.626±0.15 N/A 0.581±0.25 0.499±0.18 0.176±0.08 0.167±0.05 0.127±0.06 0.004±0.00 0.563±0.12 2.088±0.00 0.559±0.38 0.099±0.02 0.344±0.15
ENSMUSG00000067813 ENSMUST00000088542 N/A N/A 0.348±0.02 0.005±0.00 N/A 0.516±0.25 N/A 0.133±0.04 2.335±1.57 0.041±0.00 N/A 0.025±0.00 1.620±2.29 0.124±0.05
ENSMUSG00000097711 ENSMUST00000180415 0.174±0.08 0.095±0.03 0.232±0.01 0.116±0.04 0.483±0.47 0.118±0.06 0.154±0.03 0.118±0.11 0.092±0.04 N/A 0.151±0.08 0.150±0.10 0.103±0.06 0.141±0.07

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