C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 5523
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000180415 Gm5523-001 ENSMUSG00000097711 10090 - 1:13785883-13786879 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000180415
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000180415 0.174±0.08 0.095±0.03 0.232±0.01 0.116±0.04 0.483±0.47 0.118±0.06 0.154±0.03 0.118±0.11 0.092±0.04 0.151±0.08 0.150±0.10 0.103±0.06 0.141±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00012M CIL_00012M_0002 CGP 1:13668771-14310235

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000063800 gapdh-001 protein_coding Danio_rerio 0 575
ENSDART00000139939 gapdh-004 protein_coding Danio_rerio 0 414
ENSDART00000147739 gapdh-002 protein_coding Danio_rerio 0 364
ENSDART00000148397 gapdh-005 retained_intron Danio_rerio 0 255
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 1046
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 880
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 1029
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 1046
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 1046
ENST00000398586 GAPDHP15-001 processed_pseudogene Homo_sapiens 0 449
ENST00000402643 GAPDHP72-001 processed_pseudogene Homo_sapiens 0 809
ENST00000403475 RP11-378G13.2-001 processed_pseudogene Homo_sapiens 0 756
ENST00000423136 GAPDHP55-001 processed_pseudogene Homo_sapiens 0 538
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 791
ENST00000424043 GAPDHP46-001 processed_pseudogene Homo_sapiens 0 749
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 974
ENST00000426454 GAPDHP51-001 processed_pseudogene Homo_sapiens 0 651
ENST00000429913 GAPDHP29-001 processed_pseudogene Homo_sapiens 0 634
ENST00000432206 GAPDHP2-001 processed_pseudogene Homo_sapiens 0 778
ENST00000436626 GAPDHP48-001 processed_pseudogene Homo_sapiens 0 512
ENST00000436818 GAPDHP26-001 processed_pseudogene Homo_sapiens 0 647
ENST00000438477 GAPDHP58-001 processed_pseudogene Homo_sapiens 0 697
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 593
ENST00000444107 GAPDHP20-001 processed_pseudogene Homo_sapiens 0 592
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 994
ENST00000455134 GAPDHP28-001 processed_pseudogene Homo_sapiens 0 756
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 584
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 880
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 880
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 706
ENST00000503632 GAPDHP38-001 processed_pseudogene Homo_sapiens 0 771
ENST00000505218 GAPDHP40-001 processed_pseudogene Homo_sapiens 0 745
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 833
ENST00000509325 GAPDHP31-001 processed_pseudogene Homo_sapiens 0 625
ENST00000512278 GAPDHP76-001 unprocessed_pseudogene Homo_sapiens 0 261
ENST00000513369 RP11-159J3.1-001 processed_pseudogene Homo_sapiens 0 826
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 828
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 0 856
ENST00000513953 RP11-44N17.1-001 processed_pseudogene Homo_sapiens 0 514
ENST00000515313 GAPDHP62-001 processed_pseudogene Homo_sapiens 0 747
ENST00000520713 ANKRD46-009 processed_transcript Homo_sapiens 0 688
ENST00000524319 ANKRD46-003 processed_transcript Homo_sapiens 0 688
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 486
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 942

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