C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00013T_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000115295-ENSG00000171094 CGP 9606 2:29097705-29921566
GeneTranscriptPositionBiotype
ENSG00000115295 (CLIP4)
CAP-GLY domain containing linker protein family, member 4 		ENST00000320081 (CLIP4-001) 29115426-29183813 protein_coding
ENST00000401605 (CLIP4-003) 29097705-29174713 protein_coding
ENST00000401617 (CLIP4-004) 29097728-29189643 protein_coding
ENST00000404424 (CLIP4-005) 29113996-29181923 protein_coding
ENST00000415891 (CLIP4-007) 29097741-29174641 nonsense_mediated_decay
ENST00000438819 (CLIP4-011) 29130671-29135618 protein_coding
ENST00000449202 (CLIP4-009) 29118195-29135662 protein_coding
ENST00000456385 (CLIP4-006) 29114878-29174712 nonsense_mediated_decay
ENST00000471165 (CLIP4-010) 29130614-29131360 processed_transcript
ENST00000481628 (CLIP4-013) 29175363-29181758 processed_transcript
ENST00000491701 (CLIP4-008) 29121514-29132650 retained_intron
ENST00000493551 (CLIP4-012) 29160366-29167876 retained_intron
ENSG00000171094 (ALK)
anaplastic lymphoma receptor tyrosine kinase 		ENST00000389048 (ALK-001) 29192774-29921566 protein_coding
ENST00000431873 (ALK-201) 29192777-29224730 protein_coding
ENST00000453137 (ALK-002) 29220870-29223394 protein_coding
ENST00000498037 (ALK-003) 29286410-29319211 processed_transcript
ENST00000618119 (ALK-202) 29192777-29717700 protein_coding
ENSG00000197644 (AC106870.2)
 ENST00000359823 (AC106870.2-001) 29899597-29907199 antisense
ENSG00000230737 (AC106870.1)
 ENST00000421411 (AC106870.1-001) 29890371-29892354 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_00013T_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024059-ENSMUSG00000055471 CGP 10090 17:71781947-72603709
GeneTranscriptPositionBiotype
ENSMUSG00000024059 (Clip4)
CAP-GLY domain containing linker protein family, member 4 		ENSMUST00000024854 (Clip4-201) 71781947-71858351 protein_coding
ENSMUSG00000055471 (Alk)
anaplastic lymphoma kinase 		ENSMUST00000086639 (Alk-201) 71869442-72603709 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00013T_0001ENSG00000115295ENST00000320081ENST00000401605ENST00000401617ENST00000404424ENST00000415891ENST00000438819ENST00000449202ENST00000456385ENST00000471165ENST00000481628ENST00000491701ENST00000493551ENSG00000171094ENST00000389048ENST00000431873ENST00000453137ENST00000498037ENST00000618119ENSG00000197644ENST00000359823ENSG00000230737ENST00000421411CIL_00013T_0002ENSMUSG00000024059ENSMUST00000024854ENSMUSG00000055471ENSMUST00000086639
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00013T_0001ENSG00000115295ENST00000320081ENST00000401605ENST00000401617ENST00000404424ENST00000415891ENSG00000171094ENST00000389048ENST00000431873ENST00000453137ENST00000618119ENSG00000197644ENST00000359823ENSG00000230737ENST00000421411CIL_00013T_0002ENSMUSG00000024059ENSMUST00000024854ENSMUSG00000055471ENSMUST00000086639
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115295 ENST00000320081 5.329±0.00 2.756±0.00 N/A 6.405±0.49 3.649±2.79 7.396±0.00 5.057±2.48 2.742±0.00 1.371±0.94 4.007±0.10 16.796±0.00 5.096±2.37 3.002±0.79 3.001±0.42
ENST00000401605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.856±0.00 N/A N/A
ENST00000401617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.077±0.00 N/A N/A 7.223±0.00
ENST00000404424 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.958±0.00 1.549±0.42 3.311±0.00 N/A
ENST00000415891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.781±0.00 N/A N/A 6.325±3.13
ENST00000438819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481628 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491701 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493551 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000171094 ENST00000389048 N/A N/A N/A 0.464±0.00 0.037±0.00 0.097±0.05 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431873 0.145±0.00 0.032±0.00 0.295±0.00 N/A 0.082±0.00 0.156±0.00 0.068±0.04 0.024±0.00 N/A 0.051±0.00 N/A 0.048±0.01 N/A N/A
ENST00000453137 N/A N/A N/A N/A N/A N/A N/A 0.103±0.00 N/A N/A N/A 0.116±0.00 N/A N/A
ENST00000498037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618119 N/A N/A 0.019±0.00 0.334±0.00 N/A N/A N/A N/A N/A N/A N/A 0.109±0.00 N/A 0.638±0.29
ENSG00000197644 ENST00000359823 11.410±0.00 5.167±0.00 N/A 2.244±0.00 4.387±0.00 8.276±0.00 1.315±0.00 1.925±0.00 1.095±0.00 12.578±0.00 1.709±0.00 2.616±0.00 N/A 3.363±0.00
ENSG00000230737 ENST00000421411 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.374±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024059 ENSMUST00000024854 1.175±0.90 N/A 4.443±0.12 2.922±1.12 7.187±3.95 1.188±0.43 39.610±7.26 1.566±0.82 0.086±0.04 7.300±3.21 16.231±1.83 2.276±1.60 0.152±0.09 N/A
ENSMUSG00000055471 ENSMUST00000086639 0.005±0.00 0.016±0.01 0.017±0.01 0.638±0.26 0.086±0.03 0.112±0.04 0.005±0.00 0.026±0.01 0.015±0.01 0.015±0.01 0.006±0.00 0.027±0.01 0.014±0.00 0.204±0.00

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