C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: translocation associated membrane protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262213 TRAM1-001 ENSG00000067167 9606 - 8:70573442-70608369 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262213
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262213 36.901±0.00 31.630±0.00 7.930±0.00 8.190±4.70 20.838±10.21 22.749±12.44 8.840±5.56 39.948±19.87 32.584±24.20 38.622±22.28 6.834±0.00 21.589±10.09 29.849±10.60 18.444±16.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BN CIL_0003BN_0001 CGP 8:70109762-70608387
CIL_0001DD CIL_0001DD_0001 CGP 8:70573442-70669174

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 TAS receptor activity
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0006412 TAS translation
GO:0006613 TAS cotranslational protein targeting to membrane
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016021 IEA integral component of membrane
GO:0016032 IEA viral process
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027068 Tram1-001 protein_coding Mus_musculus 0 1664
ENSMUST00000185447 Tram1-004 retained_intron Mus_musculus 0 486
ENSMUST00000188377 Tram1-003 nonsense_mediated_decay Mus_musculus 0 375

Loading