C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001GF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000069031-ENSDARG00000019280 CGP 7955 21:39665220-39718803
GeneTranscriptPositionBiotype
ENSDARG00000019280 (larsb)
leucyl-tRNA synthetase b 		ENSDART00000026064 (larsb-201) 39677888-39718803 protein_coding
ENSDART00000143749 (larsb-001) 39677160-39713860 protein_coding
ENSDARG00000069031 (plac8l1)
PLAC8-like 1 		ENSDART00000100106 (plac8l1-201) 39667557-39673053 protein_coding
ENSDART00000142277 (plac8l1-002) 39670324-39673429 retained_intron
ENSDART00000148231 (plac8l1-001) 39665220-39673831 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0001GF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000173261-ENSG00000133706 CGP 9606 5:146084386-146182660
GeneTranscriptPositionBiotype
ENSG00000133706 (LARS)
leucyl-tRNA synthetase 		ENST00000274562 (LARS-201) 146113896-146182524 protein_coding
ENST00000394434 (LARS-001) 146113038-146182660 protein_coding
ENST00000503654 (LARS-011) 146168229-146182520 processed_transcript
ENST00000504323 (LARS-005) 146142959-146144731 retained_intron
ENST00000504611 (LARS-014) 146129083-146130557 retained_intron
ENST00000505223 (LARS-012) 146164398-146182650 processed_transcript
ENST00000506231 (LARS-003) 146113911-146132626 retained_intron
ENST00000506436 (LARS-010) 146172691-146182475 retained_intron
ENST00000507095 (LARS-006) 146143487-146151907 processed_transcript
ENST00000508667 (LARS-004) 146143244-146151948 retained_intron
ENST00000508709 (LARS-015) 146123979-146130216 retained_intron
ENST00000510191 (LARS-002) 146113911-146182623 protein_coding
ENST00000511505 (LARS-013) 146157397-146182649 processed_transcript
ENST00000512412 (LARS-008) 146133057-146143538 processed_transcript
ENST00000514104 (LARS-007) 146142782-146144333 retained_intron
ENST00000618084 (LARS-202) 146164315-146182625 protein_coding
ENSG00000173261 (PLAC8L1)
PLAC8-like 1 		ENST00000311450 (PLAC8L1-001) 146084386-146104369 protein_coding
ENST00000512998 (PLAC8L1-002) 146084386-146104369 nonsense_mediated_decay
ENSG00000239317 (RP11-449H3.2)
 ENST00000495857 (RP11-449H3.2-001) 146138771-146139008 processed_pseudogene
ENSG00000239602 (RP11-449H3.1)
 ENST00000477363 (RP11-449H3.1-001) 146137755-146138381 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0001GF_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000059455-ENSMUSG00000024493 CGP 10090 18:42178675-42262122
GeneTranscriptPositionBiotype
ENSMUSG00000024493 (Lars)
leucyl-tRNA synthetase 		ENSMUST00000097590 (Lars-201) 42202350-42262122 protein_coding
ENSMUSG00000059455 (Plac8l1)
PLAC8-like 1 		ENSMUST00000081374 (Plac8l1-201) 42178675-42196709 protein_coding
ENSMUSG00000096699 (Rps19-ps4)
ribosomal protein S19, pseudogene 4 		ENSMUST00000091925 (Rps19-ps4-001) 42252398-42252835 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001GF_0001ENSDARG00000019280ENSDART00000026064ENSDART00000143749ENSDARG00000069031ENSDART00000100106ENSDART00000142277ENSDART00000148231CIL_0001GF_0002ENSG00000133706ENST00000274562ENST00000394434ENST00000503654ENST00000504323ENST00000504611ENST00000505223ENST00000506231ENST00000506436ENST00000507095ENST00000508667ENST00000508709ENST00000510191ENST00000511505ENST00000512412ENST00000514104ENST00000618084ENSG00000173261ENST00000311450ENST00000512998ENSG00000239317ENST00000495857ENSG00000239602ENST00000477363CIL_0001GF_0003ENSMUSG00000024493ENSMUST00000097590ENSMUSG00000059455ENSMUST00000081374ENSMUSG00000096699ENSMUST00000091925
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001GF_0001ENSDARG00000019280ENSDART00000026064ENSDART00000143749ENSDARG00000069031ENSDART00000100106ENSDART00000142277ENSDART00000148231CIL_0001GF_0002ENSG00000133706ENST00000274562ENST00000394434ENST00000508667ENST00000508709ENST00000510191ENST00000618084ENSG00000173261ENST00000311450ENST00000512998ENSG00000239317ENST00000495857ENSG00000239602ENST00000477363CIL_0001GF_0003ENSMUSG00000024493ENSMUST00000097590ENSMUSG00000059455ENSMUST00000081374ENSMUSG00000096699ENSMUST00000091925
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000019280 ENSDART00000026064 N/A N/A N/A 1.463±0.26 N/A N/A 3.224±0.00 1.611±0.00 2.788±0.00 N/A N/A N/A N/A N/A
ENSDART00000143749 N/A N/A N/A 4.808±1.07 N/A N/A 3.053±1.42 24.278±5.36 1.952±0.00 N/A 1.476±0.00 N/A N/A N/A
ENSDARG00000069031 ENSDART00000100106 N/A N/A N/A 0.671±0.00 N/A N/A 2.854±0.92 N/A 0.186±0.00 N/A 0.740±0.00 N/A N/A N/A
ENSDART00000142277 N/A N/A N/A 0.612±0.29 N/A N/A 1.079±0.00 2.192±1.08 N/A N/A N/A N/A N/A N/A
ENSDART00000148231 N/A N/A N/A 0.149±0.00 N/A N/A 3.158±1.48 2.340±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000133706 ENST00000274562 7.484±0.00 7.189±0.00 N/A 9.955±0.00 6.627±0.00 10.030±0.00 6.237±0.00 9.379±0.00 4.395±1.20 5.467±0.29 8.281±5.18 10.433±1.39 4.623±0.18 10.526±1.42
ENST00000394434 5.728±0.00 4.060±0.00 1.738±0.00 5.088±0.46 1.559±0.00 3.510±0.00 3.309±1.62 N/A 1.535±0.92 1.918±0.00 17.631±0.00 3.586±2.51 3.291±1.40 6.038±0.00
ENST00000503654 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506231 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508667 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.596±0.00 10.944±0.00 15.887±0.00
ENST00000508709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.097±0.00 15.404±0.00 33.668±0.00
ENST00000510191 10.524±0.00 6.251±0.00 4.505±0.00 8.346±1.14 9.890±0.25 10.137±2.25 7.640±1.43 5.417±0.90 2.326±1.58 6.149±1.25 9.619±5.71 8.775±3.72 3.721±0.49 10.818±0.00
ENST00000511505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512412 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618084 N/A N/A N/A N/A 9.750±0.00 16.485±0.00 N/A 7.873±0.00 11.437±0.00 N/A N/A 7.949±0.00 N/A N/A
ENSG00000173261 ENST00000311450 N/A 0.074±0.00 N/A 0.292±0.00 N/A N/A 0.225±0.07 0.099±0.00 N/A N/A N/A 0.133±0.07 0.169±0.00 5.596±1.40
ENST00000512998 N/A N/A N/A N/A N/A 0.024±0.00 N/A N/A 0.138±0.00 0.024±0.00 0.216±0.10 N/A N/A N/A
ENSG00000239317 ENST00000495857 0.130±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000239602 ENST00000477363 0.041±0.00 N/A N/A 0.127±0.00 0.142±0.06 0.039±0.00 N/A N/A N/A 0.037±0.00 0.036±0.00 0.133±0.02 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024493 ENSMUST00000097590 3.234±2.22 2.510±0.65 7.642±3.35 7.905±4.07 2.056±0.96 2.008±1.07 3.964±0.37 2.599±0.93 5.491±4.61 4.005±1.46 9.172±0.52 5.806±5.94 20.016±9.92 3.625±2.76
ENSMUSG00000059455 ENSMUST00000081374 N/A N/A N/A 0.057±0.03 N/A 0.123±0.00 0.049±0.00 0.078±0.04 0.012±0.00 0.064±0.00 N/A N/A 0.036±0.02 34.830±19.29
ENSMUSG00000096699 ENSMUST00000091925 N/A 0.674±0.15 2.406±2.00 0.346±0.07 0.888±0.28 1.044±0.00 0.113±0.00 0.277±0.15 0.308±0.16 0.772±0.14 0.195±0.00 1.082±0.58 0.256±0.12 0.214±0.10

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