C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S19, pseudogene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000091925 Rps19-ps4-001 ENSMUSG00000096699 10090 + 18:42252398-42252835 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000091925
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000091925 0.674±0.15 2.406±2.00 0.346±0.07 0.888±0.28 1.044±0.00 0.113±0.00 0.277±0.15 0.308±0.16 0.772±0.14 0.195±0.00 1.082±0.58 0.256±0.12 0.214±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GF CIL_0001GF_0003 CGP 18:42178675-42262122
CIL_0001J0 CIL_0001J0_0003 CGP 18:42202350-42341542

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000221975 RPS19-005 protein_coding Homo_sapiens 0 632
ENST00000405355 RP11-346C16.4-001 processed_pseudogene Homo_sapiens 0 486
ENST00000415286 RPS19P1-001 processed_pseudogene Homo_sapiens 0 564
ENST00000455650 RP11-445N18.3-001 processed_pseudogene Homo_sapiens 0 427
ENST00000457967 RP11-389O22.4-001 processed_pseudogene Homo_sapiens 0 407
ENST00000477321 RP11-289K10.1-001 processed_pseudogene Homo_sapiens 0 486
ENST00000480487 RPS19P3-001 processed_pseudogene Homo_sapiens 0 573
ENST00000593863 RPS19-006 protein_coding Homo_sapiens 0 649
ENST00000598261 RPS19-007 protein_coding Homo_sapiens 0 359
ENST00000598399 RPS19-008 nonsense_mediated_decay Homo_sapiens 0 257
ENST00000598466 RPS19-004 retained_intron Homo_sapiens 0 263
ENST00000598742 RPS19-001 protein_coding Homo_sapiens 0 649
ENST00000600467 RPS19-002 protein_coding Homo_sapiens 0 346
ENST00000601492 RPS19-003 protein_coding Homo_sapiens 0 263

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