C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001TH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000044914-ENSDARG00000088837 CGP 7955 11:17122824-17993713
GeneTranscriptPositionBiotype
ENSDARG00000044914 (suclg2)
succinate-CoA ligase, GDP-forming, beta subunit 		ENSDART00000087520 (suclg2-001) 17232484-17359780 protein_coding
ENSDART00000122222 (suclg2-201) 17122824-17359666 protein_coding
ENSDARG00000088837 (CR631124.1)
Uncharacterized protein 		ENSDART00000090117 (CR631124.1-201) 17563218-17993713 protein_coding
CIL_0001TH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000172340-ENSG00000183662 CGP 9606 3:67360460-68545625
GeneTranscriptPositionBiotype
ENSG00000172340 (SUCLG2)
succinate-CoA ligase, GDP-forming, beta subunit 		ENST00000307227 (SUCLG2-001) 67374719-67654614 protein_coding
ENST00000460567 (SUCLG2-004) 67374719-67528222 protein_coding
ENST00000492795 (SUCLG2-003) 67408606-67654607 protein_coding
ENST00000493112 (SUCLG2-002) 67360460-67654610 protein_coding
ENSG00000183662 (FAM19A1)
family with sequence similarity 19 (chemokine (C-C motif)-like), member A1 		ENST00000478136 (FAM19A1-001) 68004216-68545625 protein_coding
ENST00000491017 (FAM19A1-003) 68246811-68417421 processed_transcript
ENST00000496687 (FAM19A1-002) 68006230-68545621 protein_coding
ENST00000617084 (FAM19A1-201) 68417276-68417601 protein_coding
ENSG00000214552 (COPS8P2)
COP9 signalosome subunit 8 pseudogene 2 		ENST00000473228 (COPS8P2-001) 68145004-68145630 processed_pseudogene
ENSG00000240568 (RP11-1008M1.1)
 ENST00000471084 (RP11-1008M1.1-001) 68192398-68192580 processed_pseudogene
ENSG00000241316 (SUCLG2-AS1)
SUCLG2 antisense RNA 1 (head to head) 		ENST00000464420 (SUCLG2-AS1-002) 67654697-67747110 lincRNA
ENST00000482677 (SUCLG2-AS1-001) 67654758-67947713 lincRNA
ENST00000496640 (SUCLG2-AS1-003) 67668247-67750669 lincRNA
ENSG00000242510 (NDUFB4P1)
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa pseudogene 1 		ENST00000462398 (NDUFB4P1-001) 67513940-67514320 processed_pseudogene
ENSG00000266400 (AC113171.1)
 ENST00000581789 (AC113171.1-201) 67828172-67828273 miRNA
CIL_0001TH_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000061838-ENSMUSG00000059187 CGP 10090 6:95474134-96657198
GeneTranscriptPositionBiotype
ENSMUSG00000059187 (Fam19a1)
family with sequence similarity 19, member A1 		ENSMUST00000075080 (Fam19a1-002) 96115311-96656467 protein_coding
ENSMUST00000122120 (Fam19a1-001) 96113154-96657198 protein_coding
ENSMUST00000125951 (Fam19a1-004) 96113242-96131950 processed_transcript
ENSMUST00000129844 (Fam19a1-003) 96114649-96115917 processed_transcript
ENSMUSG00000061838 (Suclg2)
succinate-Coenzyme A ligase, GDP-forming, beta subunit 		ENSMUST00000079847 (Suclg2-201) 95474134-95718837 protein_coding
ENSMUSG00000072878 (1700123L14Rik)
RIKEN cDNA 1700123L14 gene 		ENSMUST00000090061 (1700123L14Rik-001) 96164497-96166243 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001TH_0001ENSDARG00000044914ENSDART00000087520ENSDART00000122222ENSDARG00000088837ENSDART00000090117CIL_0001TH_0002ENSG00000172340ENST00000307227ENST00000460567ENST00000492795ENST00000493112ENSG00000183662ENST00000478136ENST00000491017ENST00000496687ENST00000617084ENSG00000214552ENST00000473228ENSG00000240568ENST00000471084ENSG00000241316ENST00000464420ENST00000482677ENST00000496640ENSG00000242510ENST00000462398ENSG00000266400ENST00000581789CIL_0001TH_0003ENSMUSG00000059187ENSMUST00000075080ENSMUST00000122120ENSMUST00000125951ENSMUST00000129844ENSMUSG00000061838ENSMUST00000079847ENSMUSG00000072878ENSMUST00000090061
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001TH_0001ENSDARG00000044914ENSDART00000087520ENSDART00000122222ENSDARG00000088837ENSDART00000090117CIL_0001TH_0002ENSG00000172340ENST00000307227ENST00000460567ENST00000492795ENST00000493112ENSG00000183662ENST00000478136ENST00000491017ENST00000496687ENST00000617084ENSG00000214552ENST00000473228ENSG00000240568ENST00000471084ENSG00000241316ENST00000464420ENST00000482677ENST00000496640ENSG00000242510ENST00000462398ENSG00000266400ENST00000581789CIL_0001TH_0003ENSMUSG00000059187ENSMUST00000075080ENSMUST00000122120ENSMUST00000125951ENSMUST00000129844ENSMUSG00000061838ENSMUST00000079847ENSMUSG00000072878ENSMUST00000090061
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000044914 ENSDART00000087520 N/A N/A N/A N/A N/A N/A 3.237±1.51 15.529±0.00 4.095±0.00 N/A 0.920±0.00 N/A N/A N/A
ENSDART00000122222 N/A N/A N/A 6.153±1.55 N/A N/A 20.911±7.97 34.047±9.40 10.587±0.00 N/A 3.495±0.00 N/A N/A N/A
ENSDARG00000088837 ENSDART00000090117 N/A N/A N/A 22.303±0.00 N/A N/A N/A 1.299±0.00 N/A N/A 0.884±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000172340 ENST00000307227 15.223±0.00 10.214±0.00 10.039±0.00 4.135±1.35 12.877±1.69 29.765±13.56 14.552±9.66 27.026±4.38 19.107±7.24 10.727±2.30 17.404±9.97 11.496±4.62 10.736±1.10 7.069±1.33
ENST00000460567 4.119±0.00 5.452±0.00 N/A 2.119±0.00 7.109±0.00 19.400±0.00 N/A 16.545±0.00 22.639±0.00 2.136±0.00 4.555±0.00 6.750±0.00 7.612±0.00 3.761±1.25
ENST00000492795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.441±0.00 2.524±0.00 N/A N/A
ENST00000493112 N/A N/A N/A 1.806±0.00 N/A N/A N/A 15.085±0.00 4.934±0.00 3.330±0.00 N/A N/A N/A N/A
ENSG00000183662 ENST00000478136 N/A N/A N/A 7.802±3.29 0.022±0.00 0.077±0.00 N/A N/A N/A N/A N/A 0.009±0.00 N/A N/A
ENST00000491017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.040±0.00 N/A 0.258±0.07
ENST00000496687 N/A 0.011±0.00 N/A N/A 0.033±0.00 N/A 0.021±0.00 0.060±0.00 0.014±0.00 N/A 0.022±0.00 0.022±0.01 0.025±0.00 0.064±0.00
ENST00000617084 N/A N/A N/A N/A 0.354±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214552 ENST00000473228 0.023±0.00 N/A 0.675±0.00 0.405±0.00 N/A 0.022±0.00 N/A N/A N/A N/A 0.041±0.00 N/A N/A N/A
ENSG00000240568 ENST00000471084 N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.373±0.00 N/A 2.934±0.00 N/A N/A
ENSG00000241316 ENST00000464420 N/A N/A N/A N/A N/A N/A 0.595±0.00 1.666±0.00 N/A 0.270±0.21 N/A 0.273±0.01 0.311±0.19 0.326±0.24
ENST00000482677 N/A 0.253±0.00 0.494±0.00 N/A N/A 0.150±0.00 0.071±0.00 0.262±0.00 0.182±0.00 0.057±0.00 0.067±0.00 0.050±0.02 0.045±0.00 0.046±0.00
ENST00000496640 0.394±0.00 0.792±0.00 N/A 3.509±0.00 2.988±0.00 N/A 0.778±0.25 N/A 1.006±0.73 0.391±0.12 0.681±0.00 0.252±0.10 0.199±0.00 0.450±0.23
ENSG00000242510 ENST00000462398 N/A N/A N/A N/A 0.231±0.00 N/A N/A N/A N/A 1.553±0.00 N/A 0.136±0.00 N/A N/A
ENSG00000266400 ENST00000581789 N/A 0.280±0.00 N/A 0.132±0.00 N/A N/A N/A N/A 0.132±0.00 N/A 0.142±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000059187 ENSMUST00000075080 0.060±0.02 0.151±0.04 N/A 0.602±0.00 0.077±0.04 0.172±0.10 N/A 0.079±0.05 0.015±0.02 0.268±0.04 N/A 0.030±0.02 0.017±0.01 0.013±0.01
ENSMUST00000122120 N/A 0.472±0.00 0.018±0.00 2.022±0.97 0.066±0.00 0.215±0.17 N/A 0.094±0.02 0.031±0.02 0.596±0.22 0.026±0.00 0.049±0.06 0.008±0.00 0.030±0.00
ENSMUST00000125951 N/A 0.383±0.00 N/A N/A N/A N/A 0.060±0.00 0.140±0.00 0.018±0.00 N/A 0.082±0.00 N/A N/A 0.008±0.00
ENSMUST00000129844 N/A N/A N/A N/A N/A 0.569±0.00 N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A
ENSMUSG00000061838 ENSMUST00000079847 18.295±1.50 32.905±6.22 29.291±6.32 4.464±1.85 17.325±3.71 44.426±4.15 38.665±9.92 95.655±23.82 57.386±21.18 11.254±0.81 19.079±3.51 28.045±9.20 13.333±6.55 3.217±0.89
ENSMUSG00000072878 ENSMUST00000090061 0.038±0.00 N/A 0.013±0.00 0.044±0.00 0.030±0.01 N/A N/A 0.063±0.03 N/A 0.027±0.00 0.026±0.00 N/A N/A 269.565±32.98

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