C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001ZN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000022652-ENSDARG00000038593 CGP 7955 6:51747115-51794096
GeneTranscriptPositionBiotype
ENSDARG00000022652 (psmf1)
proteasome (prosome, macropain) inhibitor subunit 1 		ENSDART00000031597 (psmf1-201) 51747117-51761909 protein_coding
ENSDART00000123304 (psmf1-001) 51747115-51761914 protein_coding
ENSDARG00000038593 (rspo4)
R-spondin family, member 4 		ENSDART00000073843 (rspo4-201) 51775396-51784866 protein_coding
ENSDART00000149003 (rspo4-001) 51775415-51794096 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0001ZN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032869-ENSMUSG00000032852 CGP 10090 2:151715812-151874668
GeneTranscriptPositionBiotype
ENSMUSG00000032852 (Rspo4)
R-spondin family, member 4 		ENSMUST00000042217 (Rspo4-001) 151842927-151874668 protein_coding
ENSMUSG00000032869 (Psmf1)
proteasome (prosome, macropain) inhibitor subunit 1 		ENSMUST00000042452 (Psmf1-001) 151715812-151741310 protein_coding
ENSMUST00000109869 (Psmf1-006) 151718265-151744186 protein_coding
ENSMUST00000123449 (Psmf1-003) 151727446-151741293 retained_intron
ENSMUST00000125977 (Psmf1-005) 151716062-151720995 retained_intron
ENSMUST00000151656 (Psmf1-004) 151719485-151729960 retained_intron
ENSMUST00000155939 (Psmf1-002) 151716062-151741293 nonsense_mediated_decay
ENSMUSG00000083088 (Gm14153)
predicted gene 14153 		ENSMUST00000119923 (Gm14153-001) 151797107-151798245 processed_pseudogene
ENSMUSG00000086620 (Rspo4os)
R-spondin family, member 4, opposite strand 		ENSMUST00000152229 (Rspo4os-001) 151865315-151866960 antisense
ENSMUSG00000086800 (4930556L07Rik)
RIKEN cDNA 4930556L07 gene 		ENSMUST00000134422 (4930556L07Rik-001) 151747578-151749978 lincRNA
ENSMUSG00000087033 (Gm14155)
predicted gene 14155 		ENSMUST00000127230 (Gm14155-001) 151829067-151832108 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001ZN_0001ENSDARG00000022652ENSDART00000031597ENSDART00000123304ENSDARG00000038593ENSDART00000073843ENSDART00000149003CIL_0001ZN_0002ENSMUSG00000032852ENSMUST00000042217ENSMUSG00000032869ENSMUST00000042452ENSMUST00000109869ENSMUST00000123449ENSMUST00000125977ENSMUST00000151656ENSMUST00000155939ENSMUSG00000083088ENSMUST00000119923ENSMUSG00000086620ENSMUST00000152229ENSMUSG00000086800ENSMUST00000134422ENSMUSG00000087033ENSMUST00000127230
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001ZN_0001ENSDARG00000022652ENSDART00000031597ENSDART00000123304ENSDARG00000038593ENSDART00000073843ENSDART00000149003CIL_0001ZN_0002ENSMUSG00000032852ENSMUST00000042217ENSMUSG00000032869ENSMUST00000042452ENSMUST00000109869ENSMUST00000125977ENSMUST00000151656ENSMUST00000155939ENSMUSG00000083088ENSMUST00000119923ENSMUSG00000086620ENSMUST00000152229ENSMUSG00000086800ENSMUST00000134422ENSMUSG00000087033ENSMUST00000127230
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000022652 ENSDART00000031597 N/A N/A N/A 3.215±0.00 N/A N/A 2.472±0.00 N/A N/A N/A 2.466±0.00 N/A N/A N/A
ENSDART00000123304 N/A N/A N/A 11.313±0.00 N/A N/A 12.246±0.00 N/A N/A N/A 7.218±0.00 N/A N/A N/A
ENSDARG00000038593 ENSDART00000073843 N/A N/A N/A 0.261±0.00 N/A N/A 0.359±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000149003 N/A N/A N/A N/A N/A N/A 0.220±0.11 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032852 ENSMUST00000042217 0.012±0.00 0.118±0.04 N/A 0.053±0.01 0.109±0.06 N/A 0.009±0.00 0.017±0.01 0.026±0.02 0.424±0.25 0.013±0.00 0.067±0.05 0.045±0.04 0.226±0.15
ENSMUSG00000032869 ENSMUST00000042452 4.100±0.83 8.183±2.50 3.746±1.17 6.330±1.92 5.936±1.68 5.064±1.59 0.964±0.26 2.469±0.90 4.163±1.40 3.643±0.63 0.845±0.40 7.691±3.51 2.622±0.54 N/A
ENSMUST00000109869 11.648±0.83 10.979±3.30 10.069±1.45 13.659±0.53 9.870±1.61 10.963±1.50 6.834±3.04 10.423±3.64 14.939±5.04 8.959±0.41 4.969±0.58 15.835±2.30 17.623±9.52 260.616±76.08
ENSMUST00000123449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125977 N/A 5.628±0.00 N/A N/A 2.293±0.00 4.753±0.00 0.670±0.00 N/A 4.157±0.00 N/A N/A 2.423±0.38 0.968±0.00 N/A
ENSMUST00000151656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 317.758±30.13
ENSMUST00000155939 2.367±0.35 3.915±0.03 1.902±0.00 N/A 3.153±0.76 3.583±0.00 1.386±0.30 3.143±1.07 3.767±0.99 4.015±0.50 1.170±0.34 2.960±1.03 1.846±1.06 N/A
ENSMUSG00000083088 ENSMUST00000119923 N/A N/A N/A 0.008±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.082±0.07 0.050±0.03
ENSMUSG00000086620 ENSMUST00000152229 0.026±0.00 N/A 0.034±0.00 0.036±0.02 N/A 0.056±0.00 0.024±0.00 0.027±0.00 0.021±0.01 0.042±0.01 N/A 0.099±0.06 0.058±0.06 0.046±0.02
ENSMUSG00000086800 ENSMUST00000134422 N/A N/A N/A 0.031±0.01 N/A N/A N/A N/A N/A N/A N/A 0.092±0.08 0.033±0.00 4.165±2.57
ENSMUSG00000087033 ENSMUST00000127230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.081±0.05 N/A

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