C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: caldesmon 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000443197 CALD1-009 ENSG00000122786 9606 + 7:134891458-134970641 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartENST00000443197
Transcript ID Brain Breast Heart
ENST00000443197 0.779±0.00 13.380±0.00 9.185±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024W CIL_00024W_0002 CGP 7:134646808-134970728
CIL_0002H0 CIL_0002H0_0001 CGP 7:134744252-135147963

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005516 IEA calmodulin binding
GO:0005886 IDA plasma membrane
GO:0006936 IEA muscle contraction
GO:0015629 IDA actin cytoskeleton
GO:0017022 IEA myosin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000149009 Cald1-016 nonsense_mediated_decay Mus_musculus 0 1899
ENSMUST00000115021 Cald1-001 protein_coding Mus_musculus 0 1557
ENSMUST00000079391 Cald1-002 protein_coding Mus_musculus 0 1459
ENSMUST00000115026 Cald1-015 protein_coding Mus_musculus 0 1443
ENSMUST00000031775 Cald1-014 protein_coding Mus_musculus 0 1024
ENSMUST00000115027 Cald1-006 protein_coding Mus_musculus 0 1024
ENSMUST00000142716 Cald1-010 protein_coding Mus_musculus 0 656
ENSMUST00000142512 Cald1-007 protein_coding Mus_musculus 0 649
ENSMUST00000123823 Cald1-009 protein_coding Mus_musculus 0 448
ENSMUST00000126181 Cald1-012 protein_coding Mus_musculus 0 342
ENSMUST00000136907 Cald1-005 protein_coding Mus_musculus 0 342

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