C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: caldesmon 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000424922 CALD1-010 ENSG00000122786 9606 + 7:134891610-134968859 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024W CIL_00024W_0002 CGP 7:134646808-134970728
CIL_0002H0 CIL_0002H0_0001 CGP 7:134744252-135147963

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005516 IEA calmodulin binding
GO:0005523 TAS tropomyosin binding
GO:0005829 TAS cytosol
GO:0005856 TAS cytoskeleton
GO:0005886 IDA plasma membrane
GO:0006928 TAS cellular component movement
GO:0006936 TAS muscle contraction
GO:0015629 IDA actin cytoskeleton
GO:0017022 IEA myosin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115021 Cald1-001 protein_coding Mus_musculus 0 1679
ENSMUST00000079391 Cald1-002 protein_coding Mus_musculus 0 1644
ENSMUST00000115026 Cald1-015 protein_coding Mus_musculus 0 1628
ENSMUST00000149009 Cald1-016 nonsense_mediated_decay Mus_musculus 0 1511
ENSMUST00000031775 Cald1-014 protein_coding Mus_musculus 0 1208
ENSMUST00000115027 Cald1-006 protein_coding Mus_musculus 0 1208
ENSMUST00000142716 Cald1-010 protein_coding Mus_musculus 0 656
ENSMUST00000142512 Cald1-007 protein_coding Mus_musculus 0 649
ENSMUST00000123823 Cald1-009 protein_coding Mus_musculus 0 448
ENSMUST00000126181 Cald1-012 protein_coding Mus_musculus 0 342
ENSMUST00000136907 Cald1-005 protein_coding Mus_musculus 0 342

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