C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD finger protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000073724 Phf1-201 ENSMUSG00000024193 10090 + 17:26933127-26937890 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000073724
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000073724 17.872±0.30 53.673±10.86 29.662±4.23 16.613±6.83 34.974±17.29 26.492±1.86 12.512±1.88 18.141±3.22 8.141±2.22 42.454±5.45 5.409±1.32 27.857±7.90 5.969±0.57 42.765±16.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000915 CIL_000915_0002 VISTA 17:26527896-27128643
CIL_0008HF CIL_0008HF_0002 VISTA 17:26563571-27166666
CIL_000425 CIL_000425_0002 CGP 17:26917091-26937890
CIL_000252 CIL_000252_0002 CGP 17:26933127-26939478

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0008270 IEA zinc ion binding
GO:0016568 IEA chromatin modification
GO:0035064 IDA methylated histone binding
GO:0035098 ISS ESC/E(Z) complex
GO:0035861 ISS site of double-strand break
GO:0061086 ISS negative regulation of histone H3-K27 methylation
GO:0061087 ISS positive regulation of histone H3-K27 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000374512 PHF1-001 protein_coding Homo_sapiens 0 1753
ENST00000374516 PHF1-002 protein_coding Homo_sapiens 0 2595
ENST00000419154 PHF1-012 protein_coding Homo_sapiens 0 712
ENST00000421466 PHF1-005 protein_coding Homo_sapiens 0 682
ENST00000423868 PHF1-013 protein_coding Homo_sapiens 0 850
ENST00000427004 PHF1-005 protein_coding Homo_sapiens 0 682
ENST00000427826 PHF1-011 nonsense_mediated_decay Homo_sapiens 0 850
ENST00000427869 PHF1-002 protein_coding Homo_sapiens 0 2601
ENST00000428274 PHF1-006 protein_coding Homo_sapiens 0 983
ENST00000447305 PHF1-006 protein_coding Homo_sapiens 0 983
ENST00000454914 PHF1-001 protein_coding Homo_sapiens 0 1759
ENST00000459809 PHF1-007 nonsense_mediated_decay Homo_sapiens 0 422
ENST00000465760 PHF1-007 processed_transcript Homo_sapiens 0 422
ENST00000475137 PHF1-011 protein_coding Homo_sapiens 0 1339
ENST00000479029 PHF1-010 retained_intron Homo_sapiens 0 643
ENST00000480565 PHF1-009 retained_intron Homo_sapiens 0 850
ENST00000482971 PHF1-010 retained_intron Homo_sapiens 0 643
ENST00000486845 PHF1-009 retained_intron Homo_sapiens 0 850
ENST00000487460 PHF1-003 processed_transcript Homo_sapiens 0 1583
ENST00000487667 PHF1-004 nonsense_mediated_decay Homo_sapiens 0 1812
ENST00000488767 PHF1-008 retained_intron Homo_sapiens 0 331
ENST00000495185 PHF1-004 nonsense_mediated_decay Homo_sapiens 0 1818
ENST00000495509 PHF1-012 nonsense_mediated_decay Homo_sapiens 0 2043
ENST00000496666 PHF1-008 retained_intron Homo_sapiens 0 331

Loading