C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002IP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163171-ENSG00000115841 CGP 9606 2:37641882-38067142
GeneTranscriptPositionBiotype
ENSG00000115841 (RMDN2)
regulator of microtubule dynamics 2 		ENST00000234195 (RMDN2-001) 37950463-38067137 protein_coding
ENST00000354545 (RMDN2-002) 37925319-38017264 protein_coding
ENST00000402091 (RMDN2-006) 37950501-37953110 protein_coding
ENST00000406384 (RMDN2-004) 37928759-38017744 protein_coding
ENST00000407257 (RMDN2-005) 37950432-38017558 protein_coding
ENST00000414644 (RMDN2-011) 37923187-37974114 protein_coding
ENST00000417700 (RMDN2-201) 37950453-38017741 protein_coding
ENST00000425641 (RMDN2-010) 37989547-38017727 protein_coding
ENST00000440353 (RMDN2-003) 37925347-37998363 nonsense_mediated_decay
ENST00000442857 (RMDN2-013) 37950464-38004187 protein_coding
ENST00000469469 (RMDN2-008) 38002868-38067142 processed_transcript
ENST00000496735 (RMDN2-015) 37974691-37989610 retained_intron
ENSG00000163171 (CDC42EP3)
CDC42 effector protein (Rho GTPase binding) 3 		ENST00000295324 (CDC42EP3-001) 37641889-37672191 protein_coding
ENST00000422687 (CDC42EP3-005) 37646546-37647658 protein_coding
ENST00000453555 (CDC42EP3-006) 37646484-37738468 protein_coding
ENST00000457889 (CDC42EP3-002) 37645941-37672199 protein_coding
ENST00000494083 (CDC42EP3-007) 37684483-37688849 retained_intron
ENST00000611976 (CDC42EP3-201) 37641882-37672535 protein_coding
ENSG00000225402 (AC010878.3)
 ENST00000456500 (AC010878.3-001) 37816915-37817961 processed_pseudogene
ENSG00000236572 (AC006369.3)
 ENST00000431712 (AC006369.3-001) 37744333-37747046 lincRNA
ENSG00000237803 (LINC00211)
long intergenic non-protein coding RNA 211 		ENST00000413792 (LINC00211-003) 37826247-37829432 lincRNA
ENST00000418746 (LINC00211-001) 37840038-37876274 lincRNA
ENST00000446799 (LINC00211-002) 37827609-37875863 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0002IP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036533-ENSMUSG00000036368 CGP 10090 17:79334025-79682152
GeneTranscriptPositionBiotype
ENSMUSG00000036368 (Rmdn2)
regulator of microtubule dynamics 2 		ENSMUST00000040368 (Rmdn2-201) 79614900-79682152 protein_coding
ENSMUSG00000036533 (Cdc42ep3)
CDC42 effector protein (Rho GTPase binding) 3 		ENSMUST00000068958 (Cdc42ep3-201) 79334025-79355091 protein_coding
ENSMUSG00000066944 (4921513D11Rik)
RIKEN cDNA 4921513D11 gene 		ENSMUST00000086570 (4921513D11Rik-201) 79626677-79628681 protein_coding
ENSMUSG00000097791 (Gm17315)
predicted gene, 17315 		ENSMUST00000181408 (Gm17315-201) 79354699-79358022 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002IP_0001ENSG00000115841ENST00000234195ENST00000354545ENST00000402091ENST00000406384ENST00000407257ENST00000414644ENST00000417700ENST00000425641ENST00000440353ENST00000442857ENST00000469469ENST00000496735ENSG00000163171ENST00000295324ENST00000422687ENST00000453555ENST00000457889ENST00000494083ENST00000611976ENSG00000225402ENST00000456500ENSG00000236572ENST00000431712ENSG00000237803ENST00000413792ENST00000418746ENST00000446799CIL_0002IP_0002ENSMUSG00000036368ENSMUST00000040368ENSMUSG00000036533ENSMUST00000068958ENSMUSG00000066944ENSMUST00000086570ENSMUSG00000097791ENSMUST00000181408
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002IP_0001ENSG00000115841ENST00000234195ENST00000354545ENST00000406384ENST00000417700ENSG00000163171ENST00000295324ENST00000457889ENST00000611976ENSG00000225402ENST00000456500ENSG00000236572ENST00000431712ENSG00000237803ENST00000413792ENST00000418746ENST00000446799CIL_0002IP_0002ENSMUSG00000036368ENSMUST00000040368ENSMUSG00000036533ENSMUST00000068958ENSMUSG00000066944ENSMUST00000086570ENSMUSG00000097791ENSMUST00000181408
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115841 ENST00000234195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.632±0.00
ENST00000354545 N/A N/A 1.764±0.00 3.750±0.00 N/A N/A N/A N/A 3.054±0.00 N/A N/A 2.285±1.10 1.001±0.06 N/A
ENST00000402091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000406384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.267±0.74 0.773±0.00 N/A
ENST00000407257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000414644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417700 N/A N/A N/A N/A N/A 2.538±0.00 N/A N/A 1.803±0.00 N/A N/A N/A N/A N/A
ENST00000425641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496735 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000163171 ENST00000295324 21.593±0.00 5.097±0.00 0.783±0.00 0.921±0.40 3.849±0.28 4.127±2.47 6.672±3.61 3.442±3.16 5.975±5.74 7.345±4.84 5.358±3.98 5.526±2.79 4.302±0.35 4.901±3.79
ENST00000422687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457889 36.753±0.00 N/A N/A N/A N/A 16.147±0.00 N/A 11.058±0.00 1.014±0.00 33.999±0.00 N/A 11.761±2.37 7.321±0.32 20.525±0.00
ENST00000494083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611976 N/A N/A N/A 0.826±0.00 N/A 1.369±0.00 1.958±0.00 N/A N/A N/A 2.568±0.00 N/A N/A N/A
ENSG00000225402 ENST00000456500 0.021±0.00 N/A N/A 0.054±0.00 0.010±0.00 0.078±0.00 0.071±0.00 0.032±0.00 0.009±0.00 N/A 0.028±0.00 N/A N/A 0.021±0.00
ENSG00000236572 ENST00000431712 N/A 0.021±0.00 N/A N/A N/A N/A 0.021±0.00 0.039±0.00 N/A 0.015±0.00 N/A 0.055±0.00 N/A N/A
ENSG00000237803 ENST00000413792 0.051±0.00 0.103±0.00 N/A N/A 0.024±0.00 0.029±0.00 0.027±0.01 N/A N/A 0.199±0.10 N/A 0.005±0.00 0.086±0.00 N/A
ENST00000418746 N/A N/A N/A N/A N/A N/A N/A 0.568±0.00 N/A N/A N/A N/A N/A 0.184±0.00
ENST00000446799 N/A N/A N/A 0.219±0.00 0.085±0.00 N/A N/A 0.052±0.00 0.046±0.00 0.373±0.00 0.023±0.00 0.061±0.00 0.042±0.00 0.305±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036368 ENSMUST00000040368 1.480±0.50 N/A 1.518±0.33 0.980±0.76 1.209±0.25 0.495±0.32 1.530±0.71 0.688±0.27 2.745±2.27 4.037±1.08 1.228±0.46 6.779±6.35 3.666±2.35 N/A
ENSMUSG00000036533 ENSMUST00000068958 9.604±1.38 1.860±0.52 65.721±13.35 5.093±1.34 5.431±0.80 8.181±2.14 8.098±2.01 7.981±0.87 6.498±7.23 10.539±3.38 11.758±2.81 5.607±1.66 7.679±4.27 25.556±13.97
ENSMUSG00000066944 ENSMUST00000086570 0.071±0.01 0.165±0.09 0.031±0.01 0.026±0.00 0.114±0.06 N/A 0.042±0.03 0.056±0.03 0.273±0.27 0.265±0.12 0.437±0.08 0.309±0.22 0.094±0.05 2.154±0.00
ENSMUSG00000097791 ENSMUST00000181408 N/A 1.311±0.49 N/A N/A N/A N/A N/A N/A 0.056±0.01 N/A N/A 1.449±0.00 N/A N/A

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