C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CDC42 effector protein (Rho GTPase binding) 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000068958 Cdc42ep3-201 ENSMUSG00000036533 10090 - 17:79334025-79355091 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068958
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068958 9.604±1.38 1.860±0.52 65.721±13.35 5.093±1.34 5.431±0.80 8.181±2.14 8.098±2.01 7.981±0.87 6.498±7.23 10.539±3.38 11.758±2.81 5.607±1.66 7.679±4.27 25.556±13.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085G CIL_00085G_0002 VISTA 17:78844758-79446183
CIL_0008VK CIL_0008VK_0002 VISTA 17:78923077-79528513
CIL_0002IM CIL_0002IM_0002 CGP 17:79051906-79355091
CIL_0002IP CIL_0002IP_0002 CGP 17:79334025-79682152

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0008360 IEA regulation of cell shape
GO:0015629 IEA actin cytoskeleton
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295324 CDC42EP3-001 protein_coding Homo_sapiens 0 976
ENST00000422687 CDC42EP3-005 protein_coding Homo_sapiens 3e-26 122
ENST00000453555 CDC42EP3-006 protein_coding Homo_sapiens 0 215
ENST00000457889 CDC42EP3-002 protein_coding Homo_sapiens 0 830
ENST00000611976 CDC42EP3-201 protein_coding Homo_sapiens 0 976

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