C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: raftlin family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027121 Rftn2-001 ENSMUSG00000025978 10090 - 1:55170159-55226782 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027121
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027121 1.925±0.75 2.208±0.00 3.012±1.26 3.023±0.71 1.379±0.00 1.290±0.48 0.586±0.04 0.903±0.20 0.172±0.06 1.015±0.17 0.317±0.09 2.386±0.68 0.395±0.19 1.261±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X7 CIL_0007X7_0002 VISTA 1:54604981-55208576
CIL_00042C CIL_00042C_0003 CGP 1:55131231-55226782
CIL_0002KG CIL_0002KG_0002 CGP 1:55170159-55248470

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005886 IEA plasma membrane
GO:0033227 IMP dsRNA transport
GO:0043330 IMP response to exogenous dsRNA

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295049 RFTN2-001 protein_coding Homo_sapiens 0 1421
ENST00000429081 RFTN2-004 protein_coding Homo_sapiens 0 399
ENST00000454447 RFTN2-002 protein_coding Homo_sapiens 0 309
ENST00000494346 RFTN2-005 retained_intron Homo_sapiens 0 638

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