C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002LJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000036036-ENSDARG00000069254 CGP 7955 7:40558562-40595563
GeneTranscriptPositionBiotype
ENSDARG00000036036 (mdka)
midkine-related growth factor 		ENSDART00000052318 (mdka-001) 40558562-40569729 protein_coding
ENSDART00000124343 (mdka-201) 40565885-40569151 protein_coding
ENSDART00000146635 (mdka-002) 40558564-40566659 protein_coding
ENSDARG00000069254 (chrm4a)
cholinergic receptor, muscarinic 4a 		ENSDART00000100639 (chrm4a-201) 40573962-40595563 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0002LJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000110492-ENSG00000180720 CGP 9606 11:46380756-46386608
GeneTranscriptPositionBiotype
ENSG00000110492 (MDK)
midkine (neurite growth-promoting factor 2) 		ENST00000359803 (MDK-001) 46381068-46383825 protein_coding
ENST00000395565 (MDK-201) 46381711-46383837 protein_coding
ENST00000395566 (MDK-005) 46381676-46383806 protein_coding
ENST00000395569 (MDK-004) 46381669-46383825 protein_coding
ENST00000405308 (MDK-006) 46380756-46383799 protein_coding
ENST00000407067 (MDK-002) 46381753-46383783 protein_coding
ENST00000441869 (MDK-007) 46380937-46382364 protein_coding
ENST00000481047 (MDK-009) 46381711-46382770 retained_intron
ENST00000489525 (MDK-003) 46381737-46383806 nonsense_mediated_decay
ENST00000490240 (MDK-008) 46381061-46382821 retained_intron
ENST00000533283 (MDK-012) 46381693-46383570 processed_transcript
ENST00000533952 (MDK-011) 46381207-46382736 protein_coding
ENST00000617138 (MDK-202) 46381655-46383837 protein_coding
ENSG00000180720 (CHRM4)
cholinergic receptor, muscarinic 4 		ENST00000433765 (CHRM4-001) 46385098-46386608 protein_coding

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002LJ_0001ENSDARG00000036036ENSDART00000052318ENSDART00000124343ENSDART00000146635ENSDARG00000069254ENSDART00000100639CIL_0002LJ_0002ENSG00000110492ENST00000359803ENST00000395565ENST00000395566ENST00000395569ENST00000405308ENST00000407067ENST00000441869ENST00000481047ENST00000489525ENST00000490240ENST00000533283ENST00000533952ENST00000617138ENSG00000180720ENST00000433765
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002LJ_0001ENSDARG00000036036ENSDART00000052318ENSDART00000124343ENSDARG00000069254ENSDART00000100639CIL_0002LJ_0002ENSG00000110492ENST00000359803ENST00000395565ENST00000395566ENST00000395569ENST00000405308ENST00000489525ENST00000490240ENST00000533283ENST00000533952ENST00000617138ENSG00000180720ENST00000433765
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000036036 ENSDART00000052318 N/A N/A N/A 34.206±10.60 N/A N/A 7.234±3.49 2.576±0.79 0.297±0.00 N/A 2.252±0.00 N/A N/A N/A
ENSDART00000124343 N/A N/A N/A 64.935±17.06 N/A N/A 32.109±3.06 6.009±0.00 0.089±0.00 N/A 6.663±0.00 N/A N/A N/A
ENSDART00000146635 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000069254 ENSDART00000100639 N/A N/A N/A 6.220±0.00 N/A N/A N/A 0.045±0.00 0.023±0.00 N/A 1.010±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000110492 ENST00000359803 N/A N/A N/A N/A N/A N/A N/A N/A 0.534±0.00 N/A N/A N/A N/A N/A
ENST00000395565 N/A N/A N/A N/A N/A N/A 0.980±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000395566 20.349±0.00 5.879±0.00 N/A N/A 11.347±6.27 10.240±7.60 1.542±0.56 12.981±0.00 N/A 42.804±0.00 1.081±0.00 300.796±290.21 49.940±23.25 13.072±0.00
ENST00000395569 N/A N/A 1.260±0.00 N/A N/A N/A N/A N/A N/A N/A 2.210±0.00 N/A N/A N/A
ENST00000405308 5.516±0.00 3.489±0.00 N/A N/A 1.092±0.00 3.523±0.00 1.215±0.00 N/A 1.201±0.00 1.242±0.00 0.983±0.00 N/A 6.433±0.00 N/A
ENST00000407067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.674±0.00 N/A N/A
ENST00000490240 N/A N/A N/A N/A 3.448±0.00 N/A N/A N/A 0.520±0.00 N/A N/A 3.427±0.00 N/A N/A
ENST00000533283 12.484±0.00 12.793±0.00 N/A N/A 19.292±0.00 4.900±4.12 N/A 5.014±3.25 N/A 14.436±12.93 1.101±0.00 13.195±0.00 15.051±0.00 N/A
ENST00000533952 N/A N/A N/A N/A 3.636±0.00 N/A N/A 0.880±0.00 N/A N/A N/A 22.790±0.00 23.073±0.00 N/A
ENST00000617138 N/A 3.394±0.00 N/A N/A 7.861±0.00 7.997±0.00 N/A N/A 0.186±0.00 18.925±0.00 N/A N/A N/A N/A
ENSG00000180720 ENST00000433765 N/A 0.076±0.00 N/A N/A 0.254±0.00 0.422±0.00 N/A 0.020±0.00 N/A 0.072±0.00 0.016±0.00 0.129±0.00 0.119±0.03 5.680±0.00

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