C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: midkine (neurite growth-promoting factor 2)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395566 MDK-005 ENSG00000110492 9606 + 11:46381676-46383806 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000395566
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000395566 20.349±0.00 5.879±0.00 11.347±6.27 10.240±7.60 1.542±0.56 12.981±0.00 42.804±0.00 1.081±0.00 300.796±290.21 49.940±23.25 13.072±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002US CIL_0002US_0003 CGP 11:46332905-46383837
CIL_0002LJ CIL_0002LJ_0002 CGP 11:46380756-46386608

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005576 TAS extracellular region
GO:0007165 NAS signal transduction
GO:0007219 TAS Notch signaling pathway
GO:0007399 NAS nervous system development
GO:0008083 IEA:NAS growth factor activity
GO:0008201 IDA heparin binding
GO:0009611 ISS response to wounding
GO:0030154 NAS cell differentiation
GO:0030325 ISS adrenal gland development
GO:0051781 IEA positive regulation of cell division

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069423 Mdk-002 protein_coding Mus_musculus 0 636
ENSMUST00000111309 Mdk-004 protein_coding Mus_musculus 0 556
ENSMUST00000028672 Mdk-001 protein_coding Mus_musculus 0 556
ENSMUST00000090602 Mdk-003 protein_coding Mus_musculus 0 520

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