C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002P3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000007314-ENSG00000224383 CGP 9606 17:63938554-64004304
GeneTranscriptPositionBiotype
ENSG00000007314 (SCN4A)
sodium channel, voltage-gated, type IV, alpha subunit 		ENST00000435607 (SCN4A-201) 63938554-63972918 protein_coding
ENST00000578147 (SCN4A-001) 63938554-63972918 protein_coding
ENST00000581514 (SCN4A-002) 63959373-63961693 retained_intron
ENST00000584310 (SCN4A-003) 63947954-63949704 retained_intron
ENSG00000224383 (PRR29)
proline rich 29 		ENST00000225760 (PRR29-006) 63998455-64004285 retained_intron
ENST00000412177 (PRR29-001) 63998351-64004304 protein_coding
ENST00000425164 (PRR29-002) 63998351-64002516 protein_coding
ENST00000577953 (PRR29-008) 63998351-64001969 protein_coding
ENST00000579184 (PRR29-003) 63998351-64002250 protein_coding
ENST00000579222 (PRR29-007) 64000857-64002493 retained_intron
ENST00000580752 (PRR29-009) 63998355-64002049 protein_coding
ENST00000582530 (PRR29-005) 63998355-64003113 retained_intron
ENST00000582540 (PRR29-004) 63998351-64002220 protein_coding
ENST00000583891 (PRR29-010) 63998355-64001753 protein_coding
ENSG00000263489 (CTC-264K15.6)
 ENST00000577329 (CTC-264K15.6-001) 63972920-63989422 lincRNA
ENSG00000264954 (RP11-214C8.2)
 ENST00000577545 (RP11-214C8.2-002) 63996470-63998931 lincRNA
ENST00000580942 (RP11-214C8.2-001) 63996071-63999899 lincRNA
CIL_0002P3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000001027-ENSMUSG00000009210 CGP 10090 11:106318592-106377558
GeneTranscriptPositionBiotype
ENSMUSG00000001027 (Scn4a)
sodium channel, voltage-gated, type IV, alpha 		ENSMUST00000021056 (Scn4a-001) 106318592-106349389 protein_coding
ENSMUST00000174877 (Scn4a-002) 106349455-106353288 processed_transcript
ENSMUSG00000009210 (2310007L24Rik)
RIKEN cDNA 2310007L24 gene 		ENSMUST00000009354 (2310007L24Rik-001) 106365472-106377114 protein_coding
ENSMUST00000106816 (2310007L24Rik-002) 106374826-106377096 protein_coding
ENSMUST00000185986 (2310007L24Rik-006) 106374845-106377348 protein_coding
ENSMUST00000188561 (2310007L24Rik-007) 106374845-106377157 protein_coding
ENSMUST00000190268 (2310007L24Rik-005) 106374845-106377558 protein_coding
ENSMUST00000190795 (2310007L24Rik-004) 106374845-106377242 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002P3_0001ENSG00000007314ENST00000435607ENST00000578147ENST00000581514ENST00000584310ENSG00000224383ENST00000225760ENST00000412177ENST00000425164ENST00000577953ENST00000579184ENST00000579222ENST00000580752ENST00000582530ENST00000582540ENST00000583891ENSG00000263489ENST00000577329ENSG00000264954ENST00000577545ENST00000580942CIL_0002P3_0002ENSMUSG00000001027ENSMUST00000021056ENSMUST00000174877ENSMUSG00000009210ENSMUST00000009354ENSMUST00000106816ENSMUST00000185986ENSMUST00000188561ENSMUST00000190268ENSMUST00000190795
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002P3_0001ENSG00000007314ENST00000435607ENST00000578147ENST00000581514ENST00000584310ENSG00000224383ENST00000225760ENST00000412177ENST00000582530ENST00000582540ENSG00000263489ENST00000577329ENSG00000264954ENST00000577545CIL_0002P3_0002ENSMUSG00000001027ENSMUST00000021056ENSMUST00000174877ENSMUSG00000009210ENSMUST00000009354ENSMUST00000106816ENSMUST00000185986ENSMUST00000188561ENSMUST00000190268ENSMUST00000190795
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000007314 ENST00000435607 N/A N/A 0.049±0.00 0.010±0.01 0.302±0.00 0.012±0.00 N/A N/A N/A N/A 8.992±0.00 0.036±0.00 0.064±0.01 N/A
ENST00000578147 N/A N/A N/A 0.010±0.01 0.640±0.00 N/A N/A N/A N/A 0.035±0.00 5.805±0.00 N/A 0.053±0.00 0.366±0.00
ENST00000581514 N/A N/A N/A N/A N/A 0.638±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584310 N/A N/A N/A N/A N/A N/A N/A N/A 0.621±0.00 0.119±0.00 N/A N/A N/A N/A
ENSG00000224383 ENST00000225760 N/A N/A 0.149±0.00 N/A N/A N/A N/A N/A 0.188±0.00 N/A N/A N/A N/A N/A
ENST00000412177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.031±0.00 N/A N/A
ENST00000425164 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577953 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580752 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582530 N/A N/A N/A 0.369±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582540 N/A N/A N/A N/A N/A 0.576±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000263489 ENST00000577329 N/A N/A N/A N/A 0.064±0.00 0.171±0.00 0.107±0.00 N/A N/A N/A N/A N/A N/A 0.107±0.00
ENSG00000264954 ENST00000577545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.057±0.00
ENST00000580942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001027 ENSMUST00000021056 0.025±0.01 0.016±0.01 0.047±0.00 0.012±0.01 5.176±0.00 0.047±0.03 1.827±0.38 0.098±0.08 0.013±0.01 0.346±0.18 11.937±2.29 0.094±0.06 0.074±0.12 0.081±0.01
ENSMUST00000174877 0.119±0.00 0.261±0.00 N/A 0.077±0.00 N/A N/A N/A N/A N/A 0.822±0.00 N/A 0.140±0.04 0.067±0.00 N/A
ENSMUSG00000009210 ENSMUST00000009354 0.039±0.01 N/A 0.114±0.00 N/A 0.252±0.03 N/A 0.985±0.37 0.034±0.00 N/A N/A 1.906±0.00 N/A 0.005±0.00 0.157±0.01
ENSMUST00000106816 0.112±0.00 N/A 0.077±0.04 0.147±0.00 0.751±0.32 0.454±0.16 1.822±1.00 0.077±0.03 0.015±0.00 9.044±0.86 N/A 16.396±6.79 0.028±0.00 0.170±0.10
ENSMUST00000185986 N/A N/A N/A N/A 0.110±0.01 N/A N/A 0.103±0.00 0.024±0.00 N/A 0.964±0.00 2.615±0.00 N/A N/A
ENSMUST00000188561 N/A 0.054±0.00 N/A N/A 0.196±0.00 N/A N/A 0.087±0.00 0.039±0.02 N/A N/A N/A 0.218±0.00 N/A
ENSMUST00000190268 0.087±0.03 0.057±0.00 N/A 0.131±0.00 N/A 0.078±0.03 N/A 0.020±0.00 0.011±0.00 N/A N/A 0.630±0.00 0.105±0.10 N/A
ENSMUST00000190795 0.159±0.00 0.060±0.02 N/A 0.032±0.00 0.261±0.05 0.227±0.10 N/A 0.042±0.00 0.076±0.00 1.396±0.00 N/A 1.730±0.97 0.202±0.00 0.056±0.00

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