C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type IV, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021056 Scn4a-001 ENSMUSG00000001027 10090 - 11:106318592-106349389 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021056
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021056 0.025±0.01 0.016±0.01 0.047±0.00 0.012±0.01 5.176±0.00 0.047±0.03 1.827±0.38 0.098±0.08 0.013±0.01 0.346±0.18 11.937±2.29 0.094±0.06 0.074±0.12 0.081±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0002 VISTA 11:105834084-106435839
CIL_0006Q8 CIL_0006Q8_0002 CGP 11:106311341-106353288
CIL_0002P3 CIL_0002P3_0002 CGP 11:106318592-106377558

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001518 IC voltage-gated sodium channel complex
GO:0005248 IDA voltage-gated sodium channel activity
GO:0005886 IBA plasma membrane
GO:0006814 IDA sodium ion transport
GO:0019228 IBA neuronal action potential
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035725 IEA sodium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000011718 scn1a-201 protein_coding Danio_rerio 0 830
ENSDART00000090979 scn1a-202 protein_coding Danio_rerio 0 830
ENSDART00000022761 scn8ab-201 protein_coding Danio_rerio 0 556
ENSDART00000151299 scn8ab-001 protein_coding Danio_rerio 0 556
ENSDART00000022382 SCN3A-202 protein_coding Danio_rerio 0 398
ENSDART00000104004 scn4ab-201 protein_coding Danio_rerio 0 278
ENSDART00000044157 scn4ab-001 protein_coding Danio_rerio 0 276
ENST00000283254 SCN3A-001 protein_coding Homo_sapiens 0 924
ENST00000283256 SCN2A-001 protein_coding Homo_sapiens 0 994
ENST00000303395 SCN1A-001 protein_coding Homo_sapiens 0 859
ENST00000333535 SCN5A-014 protein_coding Homo_sapiens 0 1495
ENST00000354534 SCN8A-001 protein_coding Homo_sapiens 0 1201
ENST00000355133 SCN8A-005 protein_coding Homo_sapiens 0 514
ENST00000360093 SCN3A-201 protein_coding Homo_sapiens 0 924
ENST00000375405 SCN1A-002 protein_coding Homo_sapiens 0 859
ENST00000375427 SCN2A-002 protein_coding Homo_sapiens 0 994
ENST00000375437 SCN2A-201 protein_coding Homo_sapiens 0 994
ENST00000409050 SCN1A-003 protein_coding Homo_sapiens 0 859
ENST00000409101 SCN3A-002 protein_coding Homo_sapiens 0 924
ENST00000413689 SCN5A-001 protein_coding Homo_sapiens 0 1495
ENST00000414099 SCN5A-004 protein_coding Homo_sapiens 0 1048
ENST00000423058 SCN1A-201 protein_coding Homo_sapiens 0 859
ENST00000423572 SCN5A-003 protein_coding Homo_sapiens 0 1495
ENST00000425664 SCN5A-201 protein_coding Homo_sapiens 0 1048
ENST00000435607 SCN4A-201 protein_coding Homo_sapiens 0 6660
ENST00000440431 SCN3A-004 protein_coding Homo_sapiens 0 442
ENST00000443581 SCN5A-202 protein_coding Homo_sapiens 0 1495
ENST00000449082 SCN10A-001 protein_coding Homo_sapiens 0 1009
ENST00000449557 SCN5A-010 protein_coding Homo_sapiens 0 1495
ENST00000450102 SCN5A-008 protein_coding Homo_sapiens 0 1495
ENST00000451551 SCN5A-203 protein_coding Homo_sapiens 0 1495
ENST00000455624 SCN5A-002 protein_coding Homo_sapiens 0 771
ENST00000464652 SCN5A-011 processed_transcript Homo_sapiens 1e-39 167
ENST00000465043 SCN3A-007 processed_transcript Homo_sapiens 3e-21 106
ENST00000545061 SCN8A-201 protein_coding Homo_sapiens 0 514
ENST00000550891 SCN8A-003 protein_coding Homo_sapiens 0 451
ENST00000578147 SCN4A-001 protein_coding Homo_sapiens 0 6654
ENST00000581514 SCN4A-002 retained_intron Homo_sapiens 0 416
ENST00000584310 SCN4A-003 retained_intron Homo_sapiens 0 534
ENST00000599343 SCN8A-202 protein_coding Homo_sapiens 0 1201

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