C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: sodium channel, voltage-gated, type IV, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000584310 SCN4A-003 ENSG00000007314 9606 - 17:63947954-63949704 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverLungENST00000584310
Transcript ID Liver Lung
ENST00000584310 0.621±0.00 0.119±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0001 VISTA 17:63374232-63977730
CIL_0006Q8 CIL_0006Q8_0001 CGP 17:63928740-63972918
CIL_0002P3 CIL_0002P3_0001 CGP 17:63938554-64004304

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108908 Scn8a-203 protein_coding Mus_musculus 0 207
ENSMUST00000108909 Scn8a-204 protein_coding Mus_musculus 0 207
ENSMUST00000108910 Scn8a-205 protein_coding Mus_musculus 0 207
ENSMUST00000082209 Scn8a-201 protein_coding Mus_musculus 0 207
ENSMUST00000021056 Scn4a-001 protein_coding Mus_musculus 0 534

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