C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Y box protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127737 Ybx1-004 ENSMUSG00000028639 10090 - 4:119277990-119282792 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverOvaryPlacentaTestisENSMUST00000127737
Transcript ID Kidney Liver Ovary Placenta Testis
ENSMUST00000127737 25.500±0.00 9.935±1.50 71.137±0.00 44.317±27.25 118.222±16.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008N2 CIL_0008N2_0002 VISTA 4:118719151-119320076
CIL_0008PM CIL_0008PM_0002 VISTA 4:118938785-119540197
CIL_0002SI CIL_0002SI_0002 CGP 4:119277981-119320546

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001701 IGI in utero embryonic development
GO:0003697 IDA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005634 IGI nucleus
GO:0005737 IDA cytoplasm
GO:0051154 IDA negative regulation of striated muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000321358 YBX1-001 protein_coding Homo_sapiens 0 1589
ENST00000332220 YBX1-004 protein_coding Homo_sapiens 0 634
ENST00000436427 YBX1-002 protein_coding Homo_sapiens 0 1589
ENST00000442962 YBX1P6-001 processed_pseudogene Homo_sapiens 0 699
ENST00000444752 YBX1P10-001 processed_pseudogene Homo_sapiens 0 918
ENST00000445822 YBX1P1-001 processed_pseudogene Homo_sapiens 0 959
ENST00000467957 YBX1-003 processed_transcript Homo_sapiens 0 580
ENST00000489612 YBX1P2-001 processed_pseudogene Homo_sapiens 0 850
ENST00000509441 YBX1P5-001 processed_pseudogene Homo_sapiens 7e-39 165
ENST00000560358 RP11-244F12.1-001 processed_pseudogene Homo_sapiens 0 793
ENST00000605472 RP11-451F14.1-001 processed_pseudogene Homo_sapiens 5e-35 152
ENST00000616651 YBX1-201 protein_coding Homo_sapiens 0 1478

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