C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Y box protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139897 Ybx1-003 ENSMUSG00000028639 10090 - 4:119282273-119294490 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalOvaryENSMUST00000139897
Transcript ID Adrenal Ovary
ENSMUST00000139897 52.291±9.34 66.831±21.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008N2 CIL_0008N2_0002 VISTA 4:118719151-119320076
CIL_0008PM CIL_0008PM_0002 VISTA 4:118938785-119540197
CIL_0002SI CIL_0002SI_0002 CGP 4:119277981-119320546

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000007699 YBX2-001 protein_coding Homo_sapiens 1e-18 99
ENST00000321358 YBX1-001 protein_coding Homo_sapiens 0 592
ENST00000332220 YBX1-004 protein_coding Homo_sapiens 0 883
ENST00000436427 YBX1-002 protein_coding Homo_sapiens 0 302
ENST00000442962 YBX1P6-001 processed_pseudogene Homo_sapiens 0 283
ENST00000444752 YBX1P10-001 processed_pseudogene Homo_sapiens 0 350
ENST00000445822 YBX1P1-001 processed_pseudogene Homo_sapiens 0 342
ENST00000467957 YBX1-003 processed_transcript Homo_sapiens 0 302
ENST00000489612 YBX1P2-001 processed_pseudogene Homo_sapiens 0 307
ENST00000560358 RP11-244F12.1-001 processed_pseudogene Homo_sapiens 0 305
ENST00000570627 YBX2-005 processed_transcript Homo_sapiens 1e-19 100
ENST00000571834 YBX2-002 retained_intron Homo_sapiens 5e-19 100
ENST00000605472 RP11-451F14.1-001 processed_pseudogene Homo_sapiens 1e-30 137
ENST00000616651 YBX1-201 protein_coding Homo_sapiens 0 525

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