C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037380 Atp8a1-001 ENSMUSG00000037685 10090 - 5:67618140-67847432 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryENSMUST00000037380
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary
ENSMUST00000037380 0.513±0.00 1.706±0.07 5.947±0.51 5.193±0.55 5.421±0.79 2.864±0.38 0.995±0.60 42.225±0.00 6.972±3.39 2.660±0.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OI CIL_0007OI_0002 UCNEbase 5:67098377-67633824
CIL_0007YP CIL_0007YP_0002 VISTA 5:67123705-67724669
CIL_0002Z3 CIL_0002Z3_0002 CGP 5:67392147-67623552
CIL_0002Z0 CIL_0002Z0_0002 CGP 5:67607883-67847432

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IEA magnesium ion binding
GO:0004012 IEA phospholipid-translocating ATPase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0007612 IMP learning
GO:0008152 IEA metabolic process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0019829 IEA cation-transporting ATPase activity
GO:0030335 IMP positive regulation of cell migration
GO:0031410 IEA cytoplasmic vesicle
GO:0045332 IEA phospholipid translocation
GO:0061092 IDA positive regulation of phospholipid translocation
GO:0070062 IEA extracellular vesicular exosome
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264449 ATP8A1-003 protein_coding Homo_sapiens 0 2695
ENST00000381668 ATP8A1-001 protein_coding Homo_sapiens 0 4650
ENST00000504024 ATP8A1-005 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000504510 ATP8A1-006 retained_intron Homo_sapiens 0 364
ENST00000506602 ATP8A1-008 nonsense_mediated_decay Homo_sapiens 0 1016
ENST00000510289 ATP8A1-002 protein_coding Homo_sapiens 0 324
ENST00000511858 ATP8A1-009 retained_intron Homo_sapiens 2e-32 143
ENST00000514372 ATP8A1-004 nonsense_mediated_decay Homo_sapiens 0 1552

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