C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002ZB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000004251-ENSDARG00000061641 CGP 7955 5:27782862-27804470
GeneTranscriptPositionBiotype
ENSDARG00000004251 (dhfr)
dihydrofolate reductase 		ENSDART00000010041 (dhfr-001) 27782862-27791037 protein_coding
ENSDARG00000061641 (ankrd34bb)
ankyrin repeat domain 34Bb 		ENSDART00000088141 (ankrd34bb-001) 27800628-27804470 protein_coding
CIL_0002ZB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021707-ENSMUSG00000045034 CGP 10090 13:92354783-92441658
GeneTranscriptPositionBiotype
ENSMUSG00000014850 (Msh3)
mutS homolog 3 (E. coli) 		ENSMUST00000022220 (Msh3-002) 92211886-92355003 protein_coding
ENSMUST00000185852 (Msh3-004) 92211872-92354995 protein_coding
ENSMUST00000186392 (Msh3-011) 92211886-92250073 retained_intron
ENSMUST00000186878 (Msh3-007) 92345869-92354953 retained_intron
ENSMUST00000187424 (Msh3-012) 92351127-92354985 protein_coding
ENSMUST00000187831 (Msh3-008) 92340672-92354515 processed_transcript
ENSMUST00000187874 (Msh3-015) 92249854-92354985 nonsense_mediated_decay
ENSMUST00000189376 (Msh3-013) 92312652-92345378 retained_intron
ENSMUST00000190393 (Msh3-006) 92346520-92354985 nonsense_mediated_decay
ENSMUST00000190462 (Msh3-009) 92307497-92309457 retained_intron
ENSMUST00000190761 (Msh3-014) 92212257-92235599 protein_coding
ENSMUST00000191242 (Msh3-005) 92211880-92241130 processed_transcript
ENSMUST00000191304 (Msh3-010) 92211881-92266072 retained_intron
ENSMUST00000191509 (Msh3-003) 92309180-92354996 nonsense_mediated_decay
ENSMUST00000191550 (Msh3-001) 92211882-92354999 nonsense_mediated_decay
ENSMUSG00000021707 (Dhfr)
dihydrofolate reductase 		ENSMUST00000022218 (Dhfr-201) 92354783-92389053 protein_coding
ENSMUSG00000045034 (Ankrd34b)
ankyrin repeat domain 34B 		ENSMUST00000061594 (Ankrd34b-001) 92425896-92441658 protein_coding
ENSMUST00000165225 (Ankrd34b-003) 92426341-92438353 protein_coding
ENSMUST00000168871 (Ankrd34b-002) 92426658-92440930 protein_coding
ENSMUSG00000090907 (C030017D09Rik)
RIKEN cDNA C030017D09 gene 		ENSMUST00000163690 (C030017D09Rik-001) 92415017-92427224 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002ZB_0001ENSDARG00000004251ENSDART00000010041ENSDARG00000061641ENSDART00000088141CIL_0002ZB_0002ENSMUSG00000014850ENSMUST00000022220ENSMUST00000185852ENSMUST00000186392ENSMUST00000186878ENSMUST00000187424ENSMUST00000187831ENSMUST00000187874ENSMUST00000189376ENSMUST00000190393ENSMUST00000190462ENSMUST00000190761ENSMUST00000191242ENSMUST00000191304ENSMUST00000191509ENSMUST00000191550ENSMUSG00000021707ENSMUST00000022218ENSMUSG00000045034ENSMUST00000061594ENSMUST00000165225ENSMUST00000168871ENSMUSG00000090907ENSMUST00000163690
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002ZB_0001ENSDARG00000004251ENSDART00000010041ENSDARG00000061641ENSDART00000088141CIL_0002ZB_0002ENSMUSG00000014850ENSMUST00000022220ENSMUST00000185852ENSMUST00000186392ENSMUST00000191242ENSMUST00000191304ENSMUST00000191509ENSMUST00000191550ENSMUSG00000021707ENSMUST00000022218ENSMUSG00000045034ENSMUST00000061594ENSMUST00000168871ENSMUSG00000090907ENSMUST00000163690
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000004251 ENSDART00000010041 N/A N/A N/A 1.883±0.29 N/A N/A 2.573±1.02 14.719±2.88 0.384±0.00 N/A 0.869±0.00 N/A N/A N/A
ENSDARG00000061641 ENSDART00000088141 N/A N/A N/A 1.915±0.00 N/A N/A 0.097±0.00 0.075±0.00 0.023±0.00 N/A 0.138±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000014850 ENSMUST00000022220 0.730±0.06 N/A 1.214±0.14 2.219±0.41 0.658±0.26 1.073±0.32 0.499±0.24 N/A N/A 0.600±0.00 1.111±0.33 1.977±0.76 1.448±0.73 1.452±0.15
ENSMUST00000185852 0.930±0.16 0.891±0.04 N/A 1.788±0.00 1.120±0.00 0.546±0.13 0.370±0.00 N/A N/A 0.654±0.00 1.256±0.48 1.824±0.78 N/A 1.170±0.50
ENSMUST00000186392 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.203±0.00 N/A N/A N/A N/A
ENSMUST00000186878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187424 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190462 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191242 1.170±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.693±0.22 N/A 2.032±0.00 2.440±0.20
ENSMUST00000191304 N/A N/A 2.042±0.46 4.101±0.32 N/A 0.996±0.00 0.990±0.33 N/A N/A N/A 1.244±0.14 5.976±0.00 4.681±0.11 6.887±0.00
ENSMUST00000191509 0.504±0.12 0.911±0.11 N/A N/A 0.497±0.07 0.450±0.05 N/A N/A N/A 0.320±0.00 N/A 0.824±0.28 N/A N/A
ENSMUST00000191550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.118±0.35 N/A N/A
ENSMUSG00000021707 ENSMUST00000022218 0.839±0.26 1.698±0.54 0.982±0.09 2.169±1.02 0.899±0.25 1.253±0.34 0.393±0.08 8.671±0.61 7.737±3.29 0.674±0.10 0.521±0.07 2.006±0.36 3.198±1.82 0.777±0.10
ENSMUSG00000045034 ENSMUST00000061594 N/A 0.332±0.10 0.013±0.00 0.786±0.36 0.030±0.00 0.036±0.02 0.008±0.00 0.156±0.09 0.007±0.00 0.031±0.01 0.009±0.00 0.043±0.04 0.028±0.01 0.063±0.02
ENSMUST00000165225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168871 0.009±0.00 0.076±0.01 0.005±0.00 0.778±0.43 0.012±0.00 0.016±0.00 0.009±0.00 0.193±0.02 0.011±0.01 N/A 0.012±0.00 0.024±0.01 0.034±0.01 0.021±0.01
ENSMUSG00000090907 ENSMUST00000163690 0.034±0.00 0.497±0.00 0.022±0.00 N/A 0.133±0.00 0.104±0.00 0.061±0.03 0.062±0.00 0.012±0.00 0.070±0.02 0.055±0.02 0.335±0.23 0.048±0.00 0.152±0.11

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