C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003H7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000134531-ENSG00000273079 CGP 9606 12:13196716-13980119
GeneTranscriptPositionBiotype
ENSG00000134531 (EMP1)
epithelial membrane protein 1 		ENST00000256951 (EMP1-001) 13196716-13219939 protein_coding
ENST00000396301 (EMP1-004) 13196786-13214800 protein_coding
ENST00000431267 (EMP1-002) 13196723-13215281 protein_coding
ENST00000535134 (EMP1-007) 13196786-13209570 processed_transcript
ENST00000536383 (EMP1-010) 13213415-13214818 retained_intron
ENST00000537612 (EMP1-012) 13211511-13216773 protein_coding
ENST00000538364 (EMP1-009) 13196783-13213944 protein_coding
ENST00000541935 (EMP1-013) 13196786-13211902 retained_intron
ENST00000542289 (EMP1-008) 13196726-13215395 processed_transcript
ENST00000542474 (EMP1-006) 13196726-13211520 protein_coding
ENST00000544053 (EMP1-003) 13196726-13214872 protein_coding
ENST00000546357 (EMP1-011) 13213452-13214365 retained_intron
ENSG00000180861 (C12orf36)
long intergenic non-protein coding RNA 1559 		ENST00000318426 (C12orf36-001) 13371089-13376711 lincRNA
ENST00000527705 (C12orf36-201) 13373014-13376430 lincRNA
ENST00000531049 (C12orf36-002) 13376229-13387167 lincRNA
ENST00000532841 (C12orf36-003) 13375527-13387167 lincRNA
ENST00000539026 (C12orf36-004) 13374798-13376675 lincRNA
ENSG00000200475 (RN7SKP162)
RNA, 7SK small nuclear pseudogene 162 		ENST00000363605 (RN7SKP162-201) 13683542-13683886 misc_RNA
ENSG00000273079 (GRIN2B)
glutamate receptor, ionotropic, N-methyl D-aspartate 2B 		ENST00000609686 (GRIN2B-001) 13537337-13980119 protein_coding
ENSG00000277935 (RP11-4N23.4)
 ENST00000621825 (RP11-4N23.4-001) 13540231-13544540 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0003H7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030208-ENSMUSG00000030209 CGP 10090 6:135362931-136173511
GeneTranscriptPositionBiotype
ENSMUSG00000030208 (Emp1)
epithelial membrane protein 1 		ENSMUST00000032330 (Emp1-001) 135362931-135383173 protein_coding
ENSMUST00000111907 (Emp1-003) 135367493-135383173 protein_coding
ENSMUST00000154270 (Emp1-002) 135362931-135383173 nonsense_mediated_decay
ENSMUSG00000030209 (Grin2b)
glutamate receptor, ionotropic, NMDA2B (epsilon 2) 		ENSMUST00000053880 (Grin2b-001) 135713232-136171722 protein_coding
ENSMUST00000111905 (Grin2b-201) 135729826-136173511 protein_coding
ENSMUST00000125905 (Grin2b-004) 136044196-136173511 protein_coding
ENSMUST00000143943 (Grin2b-003) 136044196-136173511 protein_coding
ENSMUST00000152012 (Grin2b-002) 135869703-136173511 processed_transcript
ENSMUST00000188999 (Grin2b-005) 136044203-136171889 protein_coding
ENSMUSG00000065187 (Gm25136)
predicted gene, 25136 		ENSMUST00000083253 (Gm25136-201) 135584192-135584306 snoRNA
ENSMUSG00000086239 (Gm14329)
predicted gene 14329 		ENSMUST00000136027 (Gm14329-001) 135732870-135744311 antisense
ENSMUSG00000086614 (Gm14330)
predicted gene 14330 		ENSMUST00000155455 (Gm14330-001) 135875505-135884792 antisense
ENSMUSG00000097496 (Gm26653)
predicted gene, 26653 		ENSMUST00000181537 (Gm26653-001) 136173061-136175664 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003H7_0001ENSG00000134531ENST00000256951ENST00000396301ENST00000431267ENST00000535134ENST00000536383ENST00000537612ENST00000538364ENST00000541935ENST00000542289ENST00000542474ENST00000544053ENST00000546357ENSG00000180861ENST00000318426ENST00000527705ENST00000531049ENST00000532841ENST00000539026ENSG00000200475ENST00000363605ENSG00000273079ENST00000609686ENSG00000277935ENST00000621825CIL_0003H7_0002ENSMUSG00000030208ENSMUST00000032330ENSMUST00000111907ENSMUST00000154270ENSMUSG00000030209ENSMUST00000053880ENSMUST00000111905ENSMUST00000125905ENSMUST00000143943ENSMUST00000152012ENSMUST00000188999ENSMUSG00000065187ENSMUST00000083253ENSMUSG00000086239ENSMUST00000136027ENSMUSG00000086614ENSMUST00000155455ENSMUSG00000097496ENSMUST00000181537
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003H7_0001ENSG00000134531ENST00000256951ENST00000431267ENST00000536383ENST00000537612ENST00000542289ENSG00000180861ENST00000318426ENST00000527705ENST00000532841ENST00000539026ENSG00000200475ENST00000363605ENSG00000273079ENST00000609686ENSG00000277935ENST00000621825CIL_0003H7_0002ENSMUSG00000030208ENSMUST00000032330ENSMUST00000111907ENSMUSG00000030209ENSMUST00000053880ENSMUST00000111905ENSMUST00000152012ENSMUST00000188999ENSMUSG00000065187ENSMUST00000083253ENSMUSG00000086239ENSMUST00000136027ENSMUSG00000086614ENSMUST00000155455ENSMUSG00000097496ENSMUST00000181537
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000134531 ENST00000256951 17.973±0.00 24.177±0.00 N/A 6.802±0.00 45.907±40.51 10.135±4.12 5.012±4.37 2.651±2.60 4.854±4.19 10.974±6.36 5.002±0.00 14.229±8.12 17.515±7.79 N/A
ENST00000396301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431267 85.669±0.00 N/A N/A N/A N/A N/A 22.628±0.00 0.284±0.00 1.829±0.00 N/A 14.680±0.00 N/A N/A N/A
ENST00000535134 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.246±0.00 N/A N/A N/A
ENST00000537612 N/A N/A N/A 18.284±0.00 N/A N/A 22.304±0.00 25.571±0.00 2.405±0.00 N/A N/A 41.797±0.00 N/A 24.725±0.00
ENST00000538364 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541935 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542289 N/A N/A N/A N/A N/A N/A N/A 0.477±0.00 28.870±0.00 21.346±0.00 3.958±0.00 126.755±0.00 79.044±0.00 13.290±0.00
ENST00000542474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000180861 ENST00000318426 N/A N/A N/A N/A 0.477±0.00 0.389±0.36 N/A N/A 0.004±0.00 N/A N/A 1.637±0.95 N/A 0.008±0.00
ENST00000527705 N/A N/A N/A N/A 1.219±0.00 N/A N/A N/A N/A N/A N/A 5.126±0.00 N/A N/A
ENST00000531049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532841 N/A 0.036±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00
ENST00000539026 N/A N/A N/A N/A N/A 0.159±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000200475 ENST00000363605 N/A 0.047±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000273079 ENST00000609686 0.021±0.00 0.213±0.00 0.032±0.00 5.611±0.00 0.261±0.23 0.019±0.01 0.007±0.00 0.027±0.00 N/A 0.020±0.01 0.025±0.02 0.198±0.19 0.003±0.00 0.072±0.03
ENSG00000277935 ENST00000621825 N/A N/A N/A N/A N/A 0.113±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030208 ENSMUST00000032330 97.197±26.06 16.950±2.46 44.460±4.41 11.487±2.29 52.699±4.53 150.663±25.30 20.407±2.68 21.192±2.90 1.865±0.68 80.766±5.31 7.054±1.33 37.028±11.68 13.577±11.31 1.118±0.61
ENSMUST00000111907 N/A N/A N/A 0.148±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154270 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000030209 ENSMUST00000053880 0.047±0.02 0.010±0.00 0.001±0.00 5.354±3.71 0.012±0.01 0.026±0.01 0.005±0.00 0.002±0.00 0.004±0.00 0.014±0.01 0.002±0.00 0.197±0.07 0.002±0.00 N/A
ENSMUST00000111905 N/A N/A 0.003±0.00 N/A N/A 0.032±0.00 N/A 0.017±0.02 0.022±0.02 0.009±0.01 N/A 0.092±0.03 0.003±0.00 2.913±1.64
ENSMUST00000125905 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143943 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152012 N/A 0.024±0.00 0.002±0.00 N/A 0.064±0.05 0.064±0.04 N/A N/A N/A 0.128±0.00 N/A 0.449±0.15 N/A N/A
ENSMUST00000188999 N/A N/A N/A N/A N/A 0.723±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000065187 ENSMUST00000083253 N/A N/A N/A 17.863±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000086239 ENSMUST00000136027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.011±0.00 N/A
ENSMUSG00000086614 ENSMUST00000155455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.098±0.00 N/A 0.293±0.22
ENSMUSG00000097496 ENSMUST00000181537 N/A N/A N/A N/A N/A 0.132±0.01 N/A N/A N/A N/A N/A N/A N/A N/A

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