C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-mRNA processing factor 4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000480058 PRPF4B-001 ENSG00000112739 9606 + 6:4021267-4064982 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000480058
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000480058 0.912±0.00 1.078±0.00 1.281±0.00 2.483±0.96 2.073±0.91 1.204±0.00 2.795±1.43 1.268±0.19 2.656±0.00 0.615±0.02 4.291±1.51 0.875±0.17 2.444±0.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y7 CIL_0007Y7_0001 VISTA 6:3643401-4244038
CIL_0003IQ CIL_0003IQ_0001 CGP 6:3849386-4064983
CIL_0003IR CIL_0003IR_0001 CGP 6:4021267-4087344

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0004672 TAS:IEA protein kinase activity
GO:0004674 IEA protein serine/threonine kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006468 IEA protein phosphorylation
GO:0008380 TAS RNA splicing
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077853 Prpf4b-201 protein_coding Mus_musculus 0 5736
ENSMUST00000119593 Gm11251-001 processed_pseudogene Mus_musculus 0 680

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