C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: pre-mRNA processing factor 4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000481109 PRPF4B-003 ENSG00000112739 9606 + 6:4037419-4064983 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainPlacentaENST00000481109
Transcript ID Brain Placenta
ENST00000481109 1.182±0.00 1.172±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y7 CIL_0007Y7_0001 VISTA 6:3643401-4244038
CIL_0003IQ CIL_0003IQ_0001 CGP 6:3849386-4064983
CIL_0003IR CIL_0003IR_0001 CGP 6:4021267-4087344

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004672 IEA protein kinase activity
GO:0004674 IEA protein serine/threonine kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006468 IEA protein phosphorylation
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077853 Prpf4b-201 protein_coding Mus_musculus 0 2381
ENSMUST00000119593 Gm11251-001 processed_pseudogene Mus_musculus 0 643

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