C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003IS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000145975-ENSG00000185689 CGP 9606 6:4049434-4130951
GeneTranscriptPositionBiotype
ENSG00000112739 (PRPF4B)
pre-mRNA processing factor 4B 		ENST00000337659 (PRPF4B-011) 4021326-4061907 protein_coding
ENST00000461612 (PRPF4B-009) 4062104-4064983 processed_transcript
ENST00000463634 (PRPF4B-002) 4040849-4064983 retained_intron
ENST00000466185 (PRPF4B-007) 4051982-4058890 processed_transcript
ENST00000480058 (PRPF4B-001) 4021267-4064982 nonsense_mediated_decay
ENST00000481109 (PRPF4B-003) 4037419-4064983 nonsense_mediated_decay
ENST00000490399 (PRPF4B-006) 4040848-4044226 processed_transcript
ENST00000490653 (PRPF4B-008) 4060982-4062069 processed_transcript
ENST00000494674 (PRPF4B-010) 4057160-4063556 processed_transcript
ENSG00000145975 (FAM217A)
family with sequence similarity 217, member A 		ENST00000274673 (FAM217A-001) 4068362-4079221 protein_coding
ENST00000380188 (FAM217A-003) 4068367-4087344 processed_transcript
ENST00000463904 (FAM217A-009) 4049434-4050518 processed_transcript
ENST00000469157 (FAM217A-008) 4050461-4087332 processed_transcript
ENST00000478714 (FAM217A-005) 4073458-4079221 processed_transcript
ENST00000492651 (FAM217A-007) 4073292-4079100 protein_coding
ENST00000498677 (FAM217A-006) 4069891-4079134 protein_coding
ENSG00000198721 (ECI2)
enoyl-CoA delta isomerase 2 		ENST00000361538 (ECI2-006) 4115706-4135597 protein_coding
ENST00000380118 (ECI2-003) 4115689-4135597 protein_coding
ENST00000380120 (ECI2-007) 4115702-4135590 nonsense_mediated_decay
ENST00000380125 (ECI2-001) 4115693-4135468 protein_coding
ENST00000464057 (ECI2-002) 4115706-4135575 retained_intron
ENST00000464583 (ECI2-004) 4115708-4133782 retained_intron
ENST00000465828 (ECI2-005) 4115707-4135557 protein_coding
ENST00000478266 (ECI2-010) 4115706-4135564 nonsense_mediated_decay
ENST00000489086 (ECI2-011) 4130318-4135573 retained_intron
ENST00000495548 (ECI2-009) 4127814-4135459 protein_coding
ENST00000496241 (ECI2-008) 4115700-4135591 nonsense_mediated_decay

Homo sapiens Ensembl (GRCh38)

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CIL_0003IS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021414-ENSMUSG00000021415 CGP 10090 13:34909964-34955875
GeneTranscriptPositionBiotype
ENSMUSG00000021414 (Fam217a)
family with sequence similarity 217, member A 		ENSMUST00000021851 (Fam217a-201) 34909964-34919992 protein_coding
ENSMUSG00000021415 (4933417A18Rik)
RIKEN cDNA 4933417A18 gene 		ENSMUST00000160279 (4933417A18Rik-001) 34924409-34953197 protein_coding
ENSMUST00000160905 (4933417A18Rik-002) 34924409-34955875 nonsense_mediated_decay
ENSMUSG00000021416 (Eci3)
enoyl-Coenzyme A delta isomerase 3 		ENSMUST00000021853 (Eci3-001) 34946614-34963810 protein_coding
ENSMUST00000164155 (Eci3-002) 34948084-34963788 protein_coding
ENSMUSG00000098209 (Gm8245)
predicted gene 8245 		ENSMUST00000182434 (Gm8245-001) 34940644-34941629 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003IS_0001ENSG00000112739ENST00000337659ENST00000461612ENST00000463634ENST00000466185ENST00000480058ENST00000481109ENST00000490399ENST00000490653ENST00000494674ENSG00000145975ENST00000274673ENST00000380188ENST00000463904ENST00000469157ENST00000478714ENST00000492651ENST00000498677ENSG00000198721ENST00000361538ENST00000380118ENST00000380120ENST00000380125ENST00000464057ENST00000464583ENST00000465828ENST00000478266ENST00000489086ENST00000495548ENST00000496241CIL_0003IS_0002ENSMUSG00000021414ENSMUST00000021851ENSMUSG00000021415ENSMUST00000160279ENSMUST00000160905ENSMUSG00000021416ENSMUST00000021853ENSMUST00000164155ENSMUSG00000098209ENSMUST00000182434
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003IS_0001ENSG00000112739ENST00000337659ENST00000480058ENST00000481109ENSG00000145975ENST00000274673ENST00000380188ENSG00000198721ENST00000361538ENST00000380118ENST00000380120ENST00000464057ENST00000464583ENST00000478266ENST00000489086ENST00000496241CIL_0003IS_0002ENSMUSG00000021414ENSMUST00000021851ENSMUSG00000021415ENSMUST00000160279ENSMUST00000160905ENSMUSG00000021416ENSMUST00000021853ENSMUST00000164155ENSMUSG00000098209ENSMUST00000182434
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000112739 ENST00000337659 4.346±0.00 4.868±0.00 3.584±0.00 3.246±2.05 3.293±0.00 4.297±0.35 2.893±1.28 4.132±1.16 3.125±1.33 4.009±0.07 1.484±1.17 4.546±1.56 3.862±0.72 6.520±1.08
ENST00000461612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480058 N/A 0.912±0.00 1.078±0.00 1.281±0.00 2.483±0.96 2.073±0.91 1.204±0.00 2.795±1.43 1.268±0.19 2.656±0.00 0.615±0.02 4.291±1.51 0.875±0.17 2.444±0.63
ENST00000481109 N/A N/A N/A 1.182±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.172±0.00 N/A
ENST00000490399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000145975 ENST00000274673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.582±2.16
ENST00000380188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.371±0.00
ENST00000463904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469157 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198721 ENST00000361538 15.352±0.00 9.231±0.00 6.887±0.00 3.293±1.73 11.042±8.64 10.698±4.26 20.329±0.00 21.266±1.77 12.102±10.96 10.619±0.00 28.844±22.56 14.022±5.74 10.745±4.63 12.386±0.00
ENST00000380118 16.286±0.00 4.493±0.00 3.419±0.00 5.755±3.49 4.437±2.45 5.514±3.18 13.095±6.27 29.443±1.84 6.249±2.78 3.035±0.09 17.533±6.94 12.412±5.28 12.432±4.24 N/A
ENST00000380120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.551±6.44
ENST00000380125 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464057 N/A N/A N/A N/A 1.171±0.00 N/A N/A N/A 0.964±0.00 1.648±0.00 N/A N/A N/A N/A
ENST00000464583 N/A N/A 1.342±0.00 0.826±0.47 0.462±0.00 0.726±0.00 N/A N/A N/A 0.705±0.00 N/A 1.154±0.56 N/A N/A
ENST00000465828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.728±0.00 16.039±0.00 N/A
ENST00000489086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.222±0.00 N/A N/A
ENST00000495548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.981±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021414 ENSMUST00000021851 0.084±0.01 0.166±0.09 N/A 0.080±0.00 0.131±0.11 0.051±0.02 0.087±0.03 0.172±0.03 0.045±0.03 0.040±0.03 0.012±0.00 0.262±0.17 0.158±0.15 56.374±48.21
ENSMUSG00000021415 ENSMUST00000160279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A 50.861±10.93
ENSMUST00000160905 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.827±0.00
ENSMUSG00000021416 ENSMUST00000021853 2.375±1.58 0.213±0.03 0.259±0.04 0.102±0.06 1.654±0.65 1.738±0.52 0.149±0.00 64.729±5.08 1.190±1.24 0.052±0.00 0.086±0.03 0.457±0.42 1.013±0.89 N/A
ENSMUST00000164155 1.320±0.66 0.379±0.16 N/A 1.070±0.00 1.227±0.39 0.577±0.15 0.064±0.02 13.056±1.53 0.609±0.47 0.076±0.00 0.094±0.04 0.216±0.02 0.363±0.12 N/A
ENSMUSG00000098209 ENSMUST00000182434 0.029±0.00 0.070±0.00 N/A 0.007±0.00 0.055±0.02 0.064±0.00 N/A 0.214±0.05 N/A N/A N/A 0.046±0.00 0.029±0.02 0.158±0.09

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