C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 8245
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182434 Gm8245-001 ENSMUSG00000098209 10090 + 13:34940644-34941629 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyOvaryPlacentaTestisENSMUST00000182434
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Ovary Placenta Testis
ENSMUST00000182434 0.029±0.00 0.070±0.00 0.007±0.00 0.055±0.02 0.064±0.00 0.214±0.05 0.046±0.00 0.029±0.02 0.158±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y7 CIL_0007Y7_0002 VISTA 13:34527566-35128899
CIL_0003IS CIL_0003IS_0002 CGP 13:34909964-34955875
CIL_000818 CIL_000818_0002 VISTA 13:34912312-35513577
CIL_0003IL CIL_0003IL_0002 CGP 13:34924409-34963810

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 845
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 641
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 843
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 845
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 845
ENST00000402643 GAPDHP72-001 processed_pseudogene Homo_sapiens 0 697
ENST00000403475 RP11-378G13.2-001 processed_pseudogene Homo_sapiens 0 634
ENST00000405405 GAPDHP63-001 processed_pseudogene Homo_sapiens 0 704
ENST00000419696 GAPDHP64-001 processed_pseudogene Homo_sapiens 0 617
ENST00000422905 GAPDHP67-001 processed_pseudogene Homo_sapiens 0 243
ENST00000423136 GAPDHP55-001 processed_pseudogene Homo_sapiens 0 414
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 601
ENST00000424043 GAPDHP46-001 processed_pseudogene Homo_sapiens 0 595
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 774
ENST00000425504 GAPDHP69-001 processed_pseudogene Homo_sapiens 0 632
ENST00000426454 GAPDHP51-001 processed_pseudogene Homo_sapiens 0 460
ENST00000434621 GAPDHP68-001 processed_pseudogene Homo_sapiens 0 638
ENST00000436626 GAPDHP48-001 processed_pseudogene Homo_sapiens 0 411
ENST00000436818 GAPDHP26-001 processed_pseudogene Homo_sapiens 0 442
ENST00000438477 GAPDHP58-001 processed_pseudogene Homo_sapiens 0 573
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 468
ENST00000444823 GAPDHP23-001 processed_pseudogene Homo_sapiens 0 442
ENST00000447427 GAPDHP27-001 processed_pseudogene Homo_sapiens 0 305
ENST00000450301 GAPDHP21-001 processed_pseudogene Homo_sapiens 0 579
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 815
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0.00000000000004 84
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 641
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 641
ENST00000481866 GAPDHP39-001 processed_pseudogene Homo_sapiens 0 414
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 592
ENST00000503632 GAPDHP38-001 processed_pseudogene Homo_sapiens 0 632
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 673
ENST00000509325 GAPDHP31-001 processed_pseudogene Homo_sapiens 0 490
ENST00000512110 AC007016.3-001 processed_pseudogene Homo_sapiens 0 207
ENST00000512278 GAPDHP76-001 unprocessed_pseudogene Homo_sapiens 0 241
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 689
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 0 638
ENST00000513953 RP11-44N17.1-001 processed_pseudogene Homo_sapiens 0 385
ENST00000515281 GAPDHP70-001 processed_pseudogene Homo_sapiens 0 545
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 359
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 776

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