C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003KV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000042962-ENSDARG00000060922 CGP 7955 10:43409345-43473262
GeneTranscriptPositionBiotype
ENSDARG00000042962 (dgcr2)
DiGeorge syndrome critical region gene 2 		ENSDART00000063071 (dgcr2-001) 43409345-43452355 protein_coding
ENSDARG00000060922 (dgcr14)
DiGeorge syndrome critical region gene 14 		ENSDART00000086335 (dgcr14-201) 43454393-43473230 protein_coding
ENSDART00000132976 (dgcr14-001) 43454392-43473262 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003KV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000070413-ENSG00000100056 CGP 9606 22:19036282-19144684
GeneTranscriptPositionBiotype
ENSG00000070413 (DGCR2)
DiGeorge syndrome critical region gene 2 		ENST00000263196 (DGCR2-001) 19036286-19122454 protein_coding
ENST00000389262 (DGCR2-002) 19036286-19122407 nonsense_mediated_decay
ENST00000467659 (DGCR2-003) 19037837-19057053 retained_intron
ENST00000473832 (DGCR2-004) 19056994-19065904 processed_transcript
ENST00000537045 (DGCR2-201) 19036282-19122454 protein_coding
ENST00000545799 (DGCR2-202) 19036282-19122454 protein_coding
ENST00000608548 (DGCR2-005) 19048379-19063277 processed_transcript
ENST00000615747 (DGCR2-203) 19046745-19122454 protein_coding
ENSG00000100056 (DGCR14)
DiGeorge syndrome critical region gene 14 		ENST00000252137 (DGCR14-001) 19130279-19144684 protein_coding
ENST00000434568 (DGCR14-002) 19133937-19144684 nonsense_mediated_decay
ENST00000469466 (DGCR14-004) 19142850-19144659 retained_intron
ENST00000472073 (DGCR14-003) 19133968-19144633 retained_intron
ENSG00000206203 (TSSK2)
testis-specific serine kinase 2 		ENST00000399635 (TSSK2-001) 19130808-19132623 protein_coding
ENSG00000206739 (Y_RNA)
Y RNA 		ENST00000384012 (Y_RNA.1-617) 19045256-19045367 misc_RNA
ENSG00000223461 (AC004471.9)
 ENST00000456035 (AC004471.9-001) 19121529-19124503 antisense
ENSG00000231086 (TSSK1A)
testis-specific serine kinase 1A pseudogene 		ENST00000450724 (TSSK1A-001) 19124879-19125646 unitary_pseudogene
ENSG00000237347 (AC004461.4)
 ENST00000412461 (AC004461.4-001) 19055801-19056512 processed_pseudogene
ENSG00000272682 (AC004471.10)
 ENST00000609936 (AC004471.10-001) 19124309-19128449 lincRNA

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003KV_0001ENSDARG00000042962ENSDART00000063071ENSDARG00000060922ENSDART00000086335ENSDART00000132976CIL_0003KV_0002ENSG00000070413ENST00000263196ENST00000389262ENST00000467659ENST00000473832ENST00000537045ENST00000545799ENST00000608548ENST00000615747ENSG00000100056ENST00000252137ENST00000434568ENST00000469466ENST00000472073ENSG00000206203ENST00000399635ENSG00000206739ENST00000384012ENSG00000223461ENST00000456035ENSG00000231086ENST00000450724ENSG00000237347ENST00000412461ENSG00000272682ENST00000609936
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003KV_0001ENSDARG00000042962ENSDART00000063071ENSDARG00000060922ENSDART00000086335ENSDART00000132976CIL_0003KV_0002ENSG00000070413ENST00000263196ENST00000389262ENST00000467659ENST00000537045ENST00000545799ENSG00000100056ENST00000252137ENST00000434568ENST00000472073ENSG00000206203ENST00000399635ENSG00000206739ENST00000384012ENSG00000223461ENST00000456035ENSG00000231086ENST00000450724ENSG00000237347ENST00000412461ENSG00000272682ENST00000609936
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000042962 ENSDART00000063071 N/A N/A N/A 3.873±2.23 N/A N/A 1.510±0.77 1.811±0.45 0.233±0.00 N/A 1.471±0.00 N/A N/A N/A
ENSDARG00000060922 ENSDART00000086335 N/A N/A N/A 4.122±1.20 N/A N/A 5.547±1.79 1.115±0.40 1.568±0.00 N/A 5.245±0.00 N/A N/A N/A
ENSDART00000132976 N/A N/A N/A 3.026±1.54 N/A N/A 3.588±1.81 1.658±1.14 N/A N/A 1.717±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000070413 ENST00000263196 15.871±0.00 12.464±0.00 0.891±0.00 11.033±4.66 11.245±8.25 6.548±3.05 7.443±6.02 6.883±4.97 1.731±0.44 11.517±0.00 8.066±0.00 21.198±13.50 20.749±1.41 17.006±3.06
ENST00000389262 N/A N/A 0.649±0.00 1.111±0.00 0.714±0.00 N/A N/A N/A 0.883±0.00 0.717±0.00 0.485±0.00 N/A N/A N/A
ENST00000467659 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.728±0.00 N/A N/A N/A N/A
ENST00000473832 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537045 N/A 4.947±0.00 N/A 8.632±0.00 N/A 6.160±0.00 N/A 8.659±0.00 7.141±0.00 1.555±0.00 3.352±0.93 5.878±0.00 N/A 8.124±0.00
ENST00000545799 N/A N/A N/A N/A N/A N/A N/A 0.989±0.00 N/A N/A N/A N/A N/A N/A
ENST00000608548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100056 ENST00000252137 N/A 0.514±0.00 N/A 0.369±0.05 0.162±0.00 0.738±0.00 0.217±0.02 0.364±0.08 0.188±0.06 N/A N/A 0.580±0.54 0.356±0.00 N/A
ENST00000434568 2.980±0.00 3.684±0.00 0.464±0.00 2.435±2.16 2.512±2.21 2.326±1.64 1.103±0.98 2.955±0.00 1.101±0.77 1.798±1.54 2.409±2.12 3.832±2.38 4.609±0.94 16.597±0.00
ENST00000469466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472073 3.863±0.00 5.129±0.00 N/A 2.322±1.58 2.973±0.00 0.661±0.49 1.045±0.00 2.772±0.00 0.688±0.15 1.060±0.56 2.563±0.00 3.071±2.33 3.722±2.35 N/A
ENSG00000206203 ENST00000399635 N/A N/A 0.106±0.00 N/A 0.259±0.00 0.927±0.68 N/A 0.954±0.46 N/A 0.284±0.00 0.603±0.28 2.600±0.00 N/A 85.904±0.00
ENSG00000206739 ENST00000384012 N/A N/A N/A 0.156±0.00 16.913±0.00 N/A 0.413±0.00 N/A N/A N/A N/A 1.695±0.00 N/A 1.077±0.65
ENSG00000223461 ENST00000456035 0.103±0.00 0.342±0.00 N/A N/A 0.272±0.05 0.116±0.00 N/A N/A N/A 0.668±0.00 N/A 0.120±0.03 0.147±0.00 N/A
ENSG00000231086 ENST00000450724 N/A 0.110±0.00 N/A 0.439±0.00 0.101±0.04 0.109±0.00 0.147±0.00 N/A N/A N/A 1.219±0.00 0.050±0.01 0.117±0.03 1.242±0.00
ENSG00000237347 ENST00000412461 0.175±0.00 0.323±0.00 N/A 0.373±0.00 0.071±0.00 0.454±0.00 0.060±0.00 N/A 0.182±0.00 0.137±0.00 0.056±0.00 0.120±0.02 N/A 0.472±0.00
ENSG00000272682 ENST00000609936 0.026±0.00 0.285±0.00 N/A 0.190±0.05 0.044±0.00 0.144±0.00 0.213±0.00 0.213±0.00 0.196±0.00 0.193±0.14 0.513±0.12 0.080±0.04 N/A 1.001±0.00

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