C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DiGeorge syndrome critical region gene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000263196 DGCR2-001 ENSG00000070413 9606 - 22:19036286-19122454 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263196
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263196 15.871±0.00 12.464±0.00 0.891±0.00 11.033±4.66 11.245±8.25 6.548±3.05 7.443±6.02 6.883±4.97 1.731±0.44 11.517±0.00 8.066±0.00 21.198±13.50 20.749±1.41 17.006±3.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KV CIL_0003KV_0002 CGP 22:19036282-19144684

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0007155 IEA cell adhesion
GO:0009887 TAS organ morphogenesis
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0050890 IMP cognition

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000012152 Dgcr2-004 protein_coding Mus_musculus 0 1986
ENSMUST00000117082 Dgcr2-001 protein_coding Mus_musculus 0 1967
ENSMUST00000150068 Gm20518-001 nonsense_mediated_decay Mus_musculus 0 1960
ENSMUST00000117945 Dgcr2-002 protein_coding Mus_musculus 0 1934
ENSMUST00000135229 Dgcr2-005 retained_intron Mus_musculus 0 1552
ENSMUST00000155611 Dgcr2-006 retained_intron Mus_musculus 0 1273
ENSMUST00000066127 Dgcr2-003 protein_coding Mus_musculus 0 977
ENSMUST00000155943 Dgcr2-008 processed_transcript Mus_musculus 0 627

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