C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DiGeorge syndrome critical region gene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000537045 DGCR2-201 ENSG00000070413 9606 - 22:19036282-19122454 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonKidneyLiverLungMuscleOvaryTestisENST00000537045
Transcript ID Adrenal Brain Colon Kidney Liver Lung Muscle Ovary Testis
ENST00000537045 4.947±0.00 8.632±0.00 6.160±0.00 8.659±0.00 7.141±0.00 1.555±0.00 3.352±0.93 5.878±0.00 8.124±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KV CIL_0003KV_0002 CGP 22:19036282-19144684

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0007155 IEA cell adhesion
GO:0009887 TAS organ morphogenesis
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0050890 IMP cognition

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000012152 Dgcr2-004 protein_coding Mus_musculus 0 1676
ENSMUST00000117082 Dgcr2-001 protein_coding Mus_musculus 0 1666
ENSMUST00000150068 Gm20518-001 nonsense_mediated_decay Mus_musculus 0 1650
ENSMUST00000117945 Dgcr2-002 protein_coding Mus_musculus 0 1624
ENSMUST00000135229 Dgcr2-005 retained_intron Mus_musculus 0 1552
ENSMUST00000155611 Dgcr2-006 retained_intron Mus_musculus 0 963
ENSMUST00000066127 Dgcr2-003 protein_coding Mus_musculus 0 713
ENSMUST00000155943 Dgcr2-008 processed_transcript Mus_musculus 0 492

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