C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003OB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000060430-ENSDARG00000097485 CGP 7955 17:43610415-43658353
GeneTranscriptPositionBiotype
ENSDARG00000053558 (rtkn2a)
rhotekin 2a 		ENSDART00000075596 (rtkn2a-201) 43655682-43668143 protein_coding
ENSDART00000136431 (rtkn2a-001) 43655681-43668157 protein_coding
ENSDARG00000060430 (zfyve28)
zinc finger, FYVE domain containing 28 		ENSDART00000085124 (zfyve28-201) 43610435-43639592 protein_coding
ENSDART00000139980 (zfyve28-001) 43610415-43639651 protein_coding
ENSDARG00000097485 (CFAP99)
cilia and flagella associated protein 99 		ENSDART00000156271 (CFAP99-001) 43640479-43658353 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003OB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000159733-ENSG00000249428 CGP 9606 4:2269582-2462963
GeneTranscriptPositionBiotype
ENSG00000063978 (RNF4)
ring finger protein 4 		ENST00000314289 (RNF4-001) 2468937-2515855 protein_coding
ENST00000502316 (RNF4-008) 2469097-2513811 protein_coding
ENST00000503123 (RNF4-017) 2469181-2497103 processed_transcript
ENST00000503659 (RNF4-010) 2462220-2497012 protein_coding
ENST00000504224 (RNF4-006) 2468729-2500738 protein_coding
ENST00000504782 (RNF4-012) 2469107-2490798 retained_intron
ENST00000506706 (RNF4-003) 2469453-2514474 protein_coding
ENST00000507247 (RNF4-020) 2469105-2513711 protein_coding
ENST00000507784 (RNF4-013) 2469137-2497300 retained_intron
ENST00000508235 (RNF4-022) 2512477-2625320 nonsense_mediated_decay
ENST00000509206 (RNF4-016) 2469194-2497079 processed_transcript
ENST00000509258 (RNF4-002) 2469106-2512334 protein_coding
ENST00000509388 (RNF4-007) 2469104-2513131 processed_transcript
ENST00000511600 (RNF4-005) 2479853-2515854 protein_coding
ENST00000511843 (RNF4-011) 2469106-2512590 processed_transcript
ENST00000511859 (RNF4-004) 2469140-2514503 protein_coding
ENST00000511892 (RNF4-015) 2469140-2497079 processed_transcript
ENST00000513284 (RNF4-019) 2469107-2512511 nonsense_mediated_decay
ENST00000513450 (RNF4-021) 2489811-2500698 protein_coding
ENST00000513578 (RNF4-014) 2469139-2500748 nonsense_mediated_decay
ENST00000513643 (RNF4-018) 2469159-2512597 processed_transcript
ENST00000541204 (RNF4-201) 2469068-2515854 protein_coding
ENSG00000159733 (ZFYVE28)
zinc finger, FYVE domain containing 28 		ENST00000290974 (ZFYVE28-001) 2269598-2418663 protein_coding
ENST00000503000 (ZFYVE28-003) 2330162-2418609 protein_coding
ENST00000504743 (ZFYVE28-010) 2341316-2364827 processed_transcript
ENST00000505421 (ZFYVE28-011) 2342581-2343524 processed_transcript
ENST00000508184 (ZFYVE28-009) 2339517-2406665 protein_coding
ENST00000508471 (ZFYVE28-004) 2269582-2287715 protein_coding
ENST00000509171 (ZFYVE28-008) 2328806-2418651 protein_coding
ENST00000511071 (ZFYVE28-002) 2270339-2418636 protein_coding
ENST00000514248 (ZFYVE28-012) 2270918-2271751 retained_intron
ENST00000515169 (ZFYVE28-007) 2328534-2364804 protein_coding
ENST00000515312 (ZFYVE28-006) 2270495-2364877 protein_coding
ENSG00000239247 (RN7SL589P)
RNA, 7SL, cytoplasmic 589, pseudogene 		ENST00000481268 (RN7SL589P-201) 2316197-2316506 misc_RNA
ENSG00000249077 (RP11-478C1.8)
 ENST00000506116 (RP11-478C1.8-001) 2324467-2325082 processed_pseudogene
ENSG00000251148 (RP11-478C1.7)
 ENST00000510632 (RP11-478C1.7-001) 2295584-2319089 antisense

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003OB_0001ENSDARG00000053558ENSDART00000075596ENSDART00000136431ENSDARG00000060430ENSDART00000085124ENSDART00000139980ENSDARG00000097485ENSDART00000156271CIL_0003OB_0002ENSG00000063978ENST00000314289ENST00000502316ENST00000503123ENST00000503659ENST00000504224ENST00000504782ENST00000506706ENST00000507247ENST00000507784ENST00000508235ENST00000509206ENST00000509258ENST00000509388ENST00000511600ENST00000511843ENST00000511859ENST00000511892ENST00000513284ENST00000513450ENST00000513578ENST00000513643ENST00000541204ENSG00000159733ENST00000290974ENST00000503000ENST00000504743ENST00000505421ENST00000508184ENST00000508471ENST00000509171ENST00000511071ENST00000514248ENST00000515169ENST00000515312ENSG00000239247ENST00000481268ENSG00000249077ENST00000506116ENSG00000251148ENST00000510632
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003OB_0001ENSDARG00000053558ENSDART00000075596ENSDART00000136431ENSDARG00000060430ENSDART00000085124ENSDART00000139980ENSDARG00000097485ENSDART00000156271CIL_0003OB_0002ENSG00000063978ENST00000314289ENST00000511843ENST00000511859ENST00000513284ENST00000541204ENSG00000159733ENST00000290974ENST00000503000ENST00000505421ENST00000508184ENST00000509171ENST00000511071ENST00000514248ENST00000515169ENST00000515312ENSG00000239247ENST00000481268ENSG00000249077ENST00000506116ENSG00000251148ENST00000510632
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000053558 ENSDART00000075596 N/A N/A N/A 0.791±0.41 N/A N/A 0.332±0.35 6.835±0.00 0.504±0.00 N/A N/A N/A N/A N/A
ENSDART00000136431 N/A N/A N/A N/A N/A N/A 0.098±0.07 N/A N/A N/A 0.137±0.00 N/A N/A N/A
ENSDARG00000060430 ENSDART00000085124 N/A N/A N/A N/A N/A N/A 0.891±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000139980 N/A N/A N/A 0.853±0.00 N/A N/A 0.289±0.00 N/A 0.832±0.00 N/A N/A N/A N/A N/A
ENSDARG00000097485 ENSDART00000156271 N/A N/A N/A 0.409±0.02 N/A N/A N/A 0.534±0.00 N/A N/A 0.035±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000063978 ENST00000314289 20.047±0.00 9.646±0.00 N/A 3.993±0.00 7.840±0.00 12.440±0.00 8.568±0.00 7.916±6.60 4.101±0.10 2.359±0.00 2.644±1.44 13.862±6.57 12.929±2.67 17.107±0.00
ENST00000502316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509206 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.896±0.00 N/A N/A N/A
ENST00000511859 N/A N/A 4.073±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 6.681±0.00 N/A N/A
ENST00000511892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513284 N/A N/A N/A N/A N/A 9.738±0.00 3.325±0.00 N/A N/A 13.240±0.00 N/A N/A N/A N/A
ENST00000513450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513643 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541204 N/A N/A N/A N/A 4.876±0.00 2.913±0.00 N/A N/A 2.346±0.00 N/A 4.460±0.00 N/A N/A 6.421±0.00
ENSG00000159733 ENST00000290974 3.015±0.00 0.880±0.00 N/A 5.398±0.00 0.827±0.06 1.343±0.00 0.859±0.00 4.140±0.00 0.999±0.00 1.441±0.00 0.289±0.00 1.036±0.77 0.709±0.23 3.928±0.00
ENST00000503000 N/A N/A N/A 1.312±0.00 N/A N/A N/A N/A N/A N/A N/A 2.123±0.00 N/A 4.211±0.00
ENST00000504743 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505421 0.388±0.00 0.323±0.00 N/A 0.216±0.15 0.534±0.37 0.121±0.05 0.114±0.02 N/A 0.121±0.00 0.170±0.05 N/A 0.157±0.08 0.089±0.05 0.417±0.16
ENST00000508184 N/A N/A N/A N/A N/A N/A N/A N/A 2.007±0.00 N/A 0.847±0.00 N/A N/A N/A
ENST00000508471 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509171 N/A N/A N/A N/A N/A N/A 0.406±0.00 N/A N/A N/A 0.099±0.00 N/A N/A N/A
ENST00000511071 N/A N/A N/A N/A N/A 0.630±0.00 0.062±0.00 N/A N/A 0.133±0.00 0.168±0.00 N/A 0.245±0.00 N/A
ENST00000514248 N/A N/A N/A N/A N/A N/A N/A N/A 0.720±0.00 N/A N/A N/A N/A N/A
ENST00000515169 N/A 0.720±0.00 N/A N/A N/A N/A N/A N/A 0.309±0.00 N/A N/A N/A N/A N/A
ENST00000515312 N/A N/A 0.212±0.00 N/A N/A N/A N/A N/A 0.143±0.00 N/A N/A 0.849±0.00 0.352±0.00 N/A
ENSG00000239247 ENST00000481268 0.051±0.00 0.268±0.00 N/A 0.465±0.00 0.332±0.00 0.504±0.00 N/A 0.162±0.00 0.094±0.00 0.249±0.00 N/A N/A N/A 0.457±0.01
ENSG00000249077 ENST00000506116 N/A N/A 0.175±0.00 0.190±0.00 0.396±0.00 0.245±0.00 0.017±0.00 N/A 0.533±0.00 0.499±0.00 N/A 0.140±0.02 0.042±0.00 0.143±0.11
ENSG00000251148 ENST00000510632 N/A 0.083±0.00 N/A 0.049±0.00 N/A 0.322±0.28 0.075±0.00 0.119±0.03 N/A N/A N/A N/A N/A 0.039±0.00

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