C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000063978 RNF4 9606 + 4:2462220-2625320 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000314289 RNF4-001 2468937-2515855 protein_coding
  ENST00000502316 RNF4-008 2469097-2513811 protein_coding
  ENST00000503123 RNF4-017 2469181-2497103 processed_transcript
  ENST00000503659 RNF4-010 2462220-2497012 protein_coding
  ENST00000504224 RNF4-006 2468729-2500738 protein_coding
  ENST00000504782 RNF4-012 2469107-2490798 retained_intron
  ENST00000506706 RNF4-003 2469453-2514474 protein_coding
  ENST00000507247 RNF4-020 2469105-2513711 protein_coding
  ENST00000507784 RNF4-013 2469137-2497300 retained_intron
  ENST00000508235 RNF4-022 2512477-2625320 nonsense_mediated_decay
  ENST00000509206 RNF4-016 2469194-2497079 processed_transcript
  ENST00000509258 RNF4-002 2469106-2512334 protein_coding
  ENST00000509388 RNF4-007 2469104-2513131 processed_transcript
  ENST00000511600 RNF4-005 2479853-2515854 protein_coding
  ENST00000511843 RNF4-011 2469106-2512590 processed_transcript
  ENST00000511859 RNF4-004 2469140-2514503 protein_coding
  ENST00000511892 RNF4-015 2469140-2497079 processed_transcript
  ENST00000513284 RNF4-019 2469107-2512511 nonsense_mediated_decay
  ENST00000513450 RNF4-021 2489811-2500698 protein_coding
  ENST00000513578 RNF4-014 2469139-2500748 nonsense_mediated_decay
  ENST00000513643 RNF4-018 2469159-2512597 processed_transcript
  ENST00000541204 RNF4-201 2469068-2515854 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000314289ENST00000511843ENST00000511859ENST00000513284ENST00000541204
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000314289 20.047±0.00 9.646±0.00 N/A 3.993±0.00 7.840±0.00 12.440±0.00 8.568±0.00 7.916±6.60 4.101±0.10 2.359±0.00 2.644±1.44 13.862±6.57 12.929±2.67 17.107±0.00
ENST00000511843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.896±0.00 N/A N/A N/A
ENST00000511859 N/A N/A 4.073±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 6.681±0.00 N/A N/A
ENST00000513284 N/A N/A N/A N/A N/A 9.738±0.00 3.325±0.00 N/A N/A 13.240±0.00 N/A N/A N/A N/A
ENST00000541204 N/A N/A N/A N/A 4.876±0.00 2.913±0.00 N/A N/A 2.346±0.00 N/A 4.460±0.00 N/A N/A 6.421±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003OB CIL_0003OB_0002 CGP 4:2269582-2462963
CIL_00057G CIL_00057G_0001 CGP 4:2462220-2732565

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003713 NAS transcription coactivator activity
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008134 IEA transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0016605 IDA PML body
GO:0016874 IEA ligase activity
GO:0030521 NAS androgen receptor signaling pathway
GO:0031491 ISS nucleosome binding
GO:0032184 ISS SUMO polymer binding
GO:0043161 IMP proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046685 IDA response to arsenic-containing substance
GO:0046872 IEA metal ion binding
GO:0050681 NAS androgen receptor binding
GO:0051865 ISS protein autoubiquitination
GO:0070534 ISS protein K63-linked ubiquitination
GO:0070936 ISS protein K48-linked ubiquitination
GO:0070979 ISS protein K11-linked ubiquitination
GO:0085020 ISS protein K6-linked ubiquitination
GO:0090169 IMP regulation of spindle assembly
GO:0090234 IMP regulation of kinetochore assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090993 RNF4 ring finger protein 4 protein_coding Danio_rerio
ENSMUSG00000029110 Rnf4 ring finger protein 4 protein_coding Mus_musculus

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