C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003PT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000140807-ENSG00000167208 CGP 9606 16:50548330-50681353
GeneTranscriptPositionBiotype
ENSG00000140807 (NKD1)
naked cuticle homolog 1 (Drosophila) 		ENST00000268459 (NKD1-001) 50548330-50640739 protein_coding
ENST00000564336 (NKD1-002) 50548396-50616108 processed_transcript
ENST00000566396 (NKD1-003) 50625225-50633222 retained_intron
ENSG00000167208 (SNX20)
sorting nexin 20 		ENST00000300590 (SNX20-001) 50666300-50681353 protein_coding
ENST00000330943 (SNX20-002) 50671625-50681352 protein_coding
ENST00000423026 (SNX20-003) 50666300-50681312 protein_coding
ENST00000568993 (SNX20-004) 50666558-50681302 nonsense_mediated_decay
ENST00000610485 (SNX20-201) 50673334-50681206 protein_coding
ENSG00000260029 (RP11-401P9.1)
 ENST00000569940 (RP11-401P9.1-001) 50551824-50553940 antisense
ENSG00000260249 (RP11-401P9.5)
 ENST00000570167 (RP11-401P9.5-001) 50666211-50671578 antisense
ENST00000570241 (RP11-401P9.5-002) 50668855-50671639 antisense
ENSG00000261685 (RP11-401P9.4)
 ENST00000563424 (RP11-401P9.4-001) 50645809-50649249 lincRNA
ENSG00000278909 (RP11-401P9.7)
 ENST00000623140 (RP11-401P9.7-001) 50555355-50558719 TEC
CIL_0003PT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031661-ENSMUSG00000031662 CGP 10090 8:88521344-88636128
GeneTranscriptPositionBiotype
ENSMUSG00000031661 (Nkd1)
naked cuticle 1 homolog (Drosophila) 		ENSMUST00000034086 (Nkd1-201) 88521344-88594887 protein_coding
ENSMUST00000169179 (Nkd1-202) 88527633-88594887 protein_coding
ENSMUSG00000031662 (Snx20)
sorting nexin 20 		ENSMUST00000034087 (Snx20-201) 88626828-88636128 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003PT_0001ENSG00000140807ENST00000268459ENST00000564336ENST00000566396ENSG00000167208ENST00000300590ENST00000330943ENST00000423026ENST00000568993ENST00000610485ENSG00000260029ENST00000569940ENSG00000260249ENST00000570167ENST00000570241ENSG00000261685ENST00000563424ENSG00000278909ENST00000623140CIL_0003PT_0002ENSMUSG00000031661ENSMUST00000034086ENSMUST00000169179ENSMUSG00000031662ENSMUST00000034087
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003PT_0001ENSG00000140807ENST00000268459ENST00000564336ENST00000566396ENSG00000167208ENST00000300590ENST00000330943ENST00000423026ENST00000568993ENST00000610485ENSG00000260029ENST00000569940ENSG00000260249ENST00000570167ENSG00000261685ENST00000563424ENSG00000278909ENST00000623140CIL_0003PT_0002ENSMUSG00000031661ENSMUST00000034086ENSMUST00000169179ENSMUSG00000031662ENSMUST00000034087
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140807 ENST00000268459 0.373±0.00 1.003±0.00 N/A 0.637±0.38 0.410±0.25 1.128±0.00 0.058±0.00 0.629±0.52 0.505±0.32 1.288±0.36 0.062±0.00 1.234±0.30 1.588±0.39 1.810±0.14
ENST00000564336 N/A N/A N/A N/A N/A N/A N/A 2.382±0.00 N/A N/A N/A N/A N/A N/A
ENST00000566396 N/A N/A N/A N/A N/A N/A N/A 0.649±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000167208 ENST00000300590 0.087±0.00 N/A N/A 0.079±0.00 N/A N/A N/A N/A N/A N/A N/A 0.186±0.00 0.147±0.00 0.082±0.00
ENST00000330943 0.251±0.00 3.778±0.00 0.090±0.00 0.463±0.00 0.947±0.00 0.160±0.00 0.172±0.14 0.212±0.06 0.316±0.00 1.266±0.16 N/A 0.476±0.41 1.236±0.53 N/A
ENST00000423026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.129±0.00 0.086±0.00 N/A N/A
ENST00000568993 N/A N/A 0.114±0.00 N/A 0.180±0.00 0.246±0.00 0.093±0.00 0.158±0.00 0.237±0.13 N/A 0.168±0.04 0.317±0.08 0.423±0.11 N/A
ENST00000610485 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.342±0.00 0.609±0.00 N/A N/A N/A
ENSG00000260029 ENST00000569940 N/A 0.085±0.00 N/A 0.040±0.02 0.195±0.00 N/A N/A N/A 0.046±0.00 0.250±0.00 N/A 0.157±0.07 N/A 0.041±0.00
ENSG00000260249 ENST00000570167 N/A N/A N/A N/A 0.094±0.00 N/A N/A 0.047±0.01 N/A N/A N/A 0.043±0.00 N/A N/A
ENST00000570241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000261685 ENST00000563424 0.633±0.00 1.863±0.00 0.216±0.00 1.463±0.94 0.672±0.12 1.244±0.98 0.154±0.00 1.261±0.99 0.371±0.12 0.979±0.25 0.108±0.01 1.293±0.76 0.335±0.23 1.278±0.77
ENSG00000278909 ENST00000623140 0.008±0.00 0.110±0.00 0.092±0.00 0.054±0.00 0.186±0.12 0.090±0.01 0.043±0.03 0.029±0.00 0.041±0.00 0.238±0.19 N/A 0.244±0.29 0.094±0.00 0.087±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031661 ENSMUST00000034086 11.146±2.13 14.203±0.76 18.668±1.33 4.954±1.95 3.627±1.15 8.739±0.57 0.541±0.16 2.075±0.23 1.408±0.93 29.519±11.21 0.174±0.04 9.999±4.42 1.436±0.72 0.578±0.16
ENSMUST00000169179 N/A 2.483±0.00 N/A N/A 1.661±0.00 N/A N/A N/A N/A N/A 0.147±0.00 3.223±1.65 N/A N/A
ENSMUSG00000031662 ENSMUST00000034087 2.272±0.15 0.784±0.31 1.455±0.09 1.118±1.18 18.091±10.54 10.055±1.73 0.588±0.12 0.833±0.29 1.668±1.87 4.371±0.65 0.342±0.56 1.821±0.95 1.541±1.05 0.181±0.09

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