C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000568993 SNX20-004 ENSG00000167208 9606 - 16:50666558-50681302 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverMuscleOvaryPlacentaENST00000568993
Transcript ID Bladder Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENST00000568993 0.114±0.00 0.180±0.00 0.246±0.00 0.093±0.00 0.158±0.00 0.237±0.13 0.168±0.04 0.317±0.08 0.423±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0001 UCNEbase 16:50459337-51906374
CIL_00090I CIL_00090I_0001 VISTA 16:50514444-51115745
CIL_00085B CIL_00085B_0001 VISTA 16:50535781-51137187
CIL_00090J CIL_00090J_0001 VISTA 16:50540952-51141798
CIL_0003PT CIL_0003PT_0001 CGP 16:50548330-50681353
CIL_00090K CIL_00090K_0001 VISTA 16:50643117-51244272
CIL_00090L CIL_00090L_0001 VISTA 16:50648118-51248778
CIL_0003PS CIL_0003PS_0001 CGP 16:50666300-50733077

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005768 IEA endosome
GO:0005886 IEA plasma membrane
GO:0015031 IEA protein transport
GO:0035091 IEA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034087 Snx20-201 protein_coding Mus_musculus 0 211

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