C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034087 Snx20-201 ENSMUSG00000031662 10090 - 8:88626828-88636128 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034087
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034087 2.272±0.15 0.784±0.31 1.455±0.09 1.118±1.18 18.091±10.54 10.055±1.73 0.588±0.12 0.833±0.29 1.668±1.87 4.371±0.65 0.342±0.56 1.821±0.95 1.541±1.05 0.181±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0003 UCNEbase 8:88447800-92743752
CIL_00090I CIL_00090I_0002 VISTA 8:88457981-89059109
CIL_00085B CIL_00085B_0002 VISTA 8:88474689-89076074
CIL_00090J CIL_00090J_0002 VISTA 8:88479183-89079972
CIL_0003PT CIL_0003PT_0002 CGP 8:88521344-88636128
CIL_00090K CIL_00090K_0002 VISTA 8:88577161-89178261
CIL_00090L CIL_00090L_0002 VISTA 8:88581293-89181923
CIL_00090M CIL_00090M_0002 VISTA 8:88602694-89203557
CIL_00090N CIL_00090N_0002 VISTA 8:88624827-89225618
CIL_0003PS CIL_0003PS_0002 CGP 8:88626828-88688474

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005768 IEA endosome
GO:0005886 IEA plasma membrane
GO:0015031 IEA protein transport
GO:0035091 IEA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000300590 SNX20-001 protein_coding Homo_sapiens 0 211
ENST00000330943 SNX20-002 protein_coding Homo_sapiens 0 728
ENST00000423026 SNX20-003 protein_coding Homo_sapiens 0 206
ENST00000568993 SNX20-004 nonsense_mediated_decay Homo_sapiens 0 211
ENST00000610485 SNX20-201 protein_coding Homo_sapiens 0 283

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