C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 153kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262077 NUP153-001 ENSG00000124789 9606 - 6:17615038-17706387 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262077
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262077 7.464±0.00 4.699±0.00 3.915±0.00 4.582±0.36 6.522±1.67 4.871±0.37 3.227±2.30 3.534±1.39 4.212±2.55 4.911±0.43 7.134±3.29 7.982±1.45 6.389±0.39 16.422±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009C9 CIL_0009C9_0001 VISTA 6:17172901-17774881
CIL_0008JF CIL_0008JF_0001 VISTA 6:17172919-17774874
CIL_0008B7 CIL_0008B7_0001 VISTA 6:17234961-17839440
CIL_00081D CIL_00081D_0001 VISTA 6:17414467-18016353
CIL_0003RM CIL_0003RM_0001 CGP 6:17600355-17706834
CIL_0003RN CIL_0003RN_0001 CGP 6:17615035-17987623

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0003677 IEA DNA binding
GO:0005215 TAS transporter activity
GO:0005487 IDA nucleocytoplasmic transporter activity
GO:0005515 IPI protein binding
GO:0005643 IDA nuclear pore
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005975 TAS carbohydrate metabolic process
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008270 IEA zinc ion binding
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015031 IEA protein transport
GO:0015758 TAS glucose transport
GO:0016032 TAS viral process
GO:0017056 IMP structural constituent of nuclear pore
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0031965 IDA nuclear membrane
GO:0034399 IDA nuclear periphery
GO:0042405 IDA nuclear inclusion body
GO:0042802 IPI identical protein binding
GO:0043495 IMP protein anchor
GO:0044281 TAS small molecule metabolic process
GO:0044615 IDA nuclear pore nuclear basket
GO:0046718 IEA viral entry into host cell
GO:0046832 IDA negative regulation of RNA export from nucleus
GO:0051028 IEA mRNA transport
GO:0051292 IMP nuclear pore complex assembly
GO:0055085 TAS transmembrane transport
GO:0075732 IEA viral penetration into host nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021803 Nup153-001 protein_coding Mus_musculus 0 6043
ENSMUST00000183299 Nup153-002 processed_transcript Mus_musculus 0 797
ENSMUST00000182156 Nup153-003 retained_intron Mus_musculus 0 424
ENSMUST00000182914 Nup153-006 retained_intron Mus_musculus 0 403
ENSMUST00000182358 Nup153-005 retained_intron Mus_musculus 0 267

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