C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003SC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000027419-ENSDARG00000015126 CGP 7955 6:3642627-3689991
GeneTranscriptPositionBiotype
ENSDARG00000015126 (gorasp2)
golgi reassembly stacking protein 2 		ENSDART00000013743 (gorasp2-001) 3678916-3689991 protein_coding
ENSDARG00000027419 (gad1b)
glutamate decarboxylase 1b 		ENSDART00000003008 (gad1b-201) 3642810-3676988 protein_coding
ENSDART00000122348 (gad1b-001) 3642627-3676989 protein_coding
ENSDART00000138185 (gad1b-003) 3649318-3665118 processed_transcript
ENSDART00000140419 (gad1b-002) 3642653-3653104 processed_transcript

Danio rerio Ensembl (Zv9)

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CIL_0003SC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000128683-ENSG00000115806 CGP 9606 2:170813213-170967129
GeneTranscriptPositionBiotype
ENSG00000115806 (GORASP2)
golgi reassembly stacking protein 2, 55kDa 		ENST00000234160 (GORASP2-001) 170928526-170967129 protein_coding
ENST00000442798 (GORASP2-002) 170929321-170966623 nonsense_mediated_decay
ENST00000444801 (GORASP2-005) 170929197-170951366 nonsense_mediated_decay
ENST00000454751 (GORASP2-009) 170929267-170949743 nonsense_mediated_decay
ENST00000455067 (GORASP2-008) 170929257-170949715 nonsense_mediated_decay
ENST00000471559 (GORASP2-004) 170928464-170956514 processed_transcript
ENST00000486498 (GORASP2-003) 170953818-170966601 retained_intron
ENST00000488928 (GORASP2-011) 170950032-170951614 retained_intron
ENST00000493692 (GORASP2-007) 170929253-170965891 processed_transcript
ENST00000497674 (GORASP2-006) 170929253-170948761 retained_intron
ENST00000497928 (GORASP2-010) 170929433-170949659 processed_transcript
ENSG00000128683 (GAD1)
glutamate decarboxylase 1 (brain, 67kDa) 		ENST00000344257 (GAD1-002) 170816912-170842759 protein_coding
ENST00000358196 (GAD1-001) 170816562-170861151 protein_coding
ENST00000375272 (GAD1-201) 170816690-170842756 protein_coding
ENST00000414527 (GAD1-013) 170817038-170859916 nonsense_mediated_decay
ENST00000429023 (GAD1-004) 170818611-170844157 processed_transcript
ENST00000445006 (GAD1-008) 170816114-170822116 protein_coding
ENST00000454603 (GAD1-007) 170813213-170829585 protein_coding
ENST00000455008 (GAD1-009) 170817255-170830991 protein_coding
ENST00000456864 (GAD1-010) 170817769-170831008 protein_coding
ENST00000462739 (GAD1-014) 170843802-170845543 retained_intron
ENST00000478562 (GAD1-006) 170852488-170861147 retained_intron
ENST00000485013 (GAD1-011) 170821718-170829620 retained_intron
ENST00000486850 (GAD1-015) 170822087-170829872 protein_coding
ENST00000488724 (GAD1-005) 170849067-170860253 retained_intron
ENST00000493270 (GAD1-012) 170828968-170831090 retained_intron
ENST00000493875 (GAD1-003) 170817770-170861151 nonsense_mediated_decay

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003SC_0001ENSDARG00000015126ENSDART00000013743ENSDARG00000027419ENSDART00000003008ENSDART00000122348ENSDART00000138185ENSDART00000140419CIL_0003SC_0002ENSG00000115806ENST00000234160ENST00000442798ENST00000444801ENST00000454751ENST00000455067ENST00000471559ENST00000486498ENST00000488928ENST00000493692ENST00000497674ENST00000497928ENSG00000128683ENST00000344257ENST00000358196ENST00000375272ENST00000414527ENST00000429023ENST00000445006ENST00000454603ENST00000455008ENST00000456864ENST00000462739ENST00000478562ENST00000485013ENST00000486850ENST00000488724ENST00000493270ENST00000493875
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003SC_0001ENSDARG00000015126ENSDART00000013743ENSDARG00000027419ENSDART00000003008ENSDART00000122348ENSDART00000138185ENSDART00000140419CIL_0003SC_0002ENSG00000115806ENST00000234160ENST00000442798ENST00000471559ENST00000486498ENST00000488928ENST00000493692ENSG00000128683ENST00000344257ENST00000358196ENST00000414527ENST00000429023ENST00000478562ENST00000485013ENST00000488724ENST00000493270ENST00000493875
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000015126 ENSDART00000013743 N/A N/A N/A 16.882±8.56 N/A N/A 10.453±12.25 6.581±2.38 5.836±0.00 N/A 15.566±0.00 N/A N/A N/A
ENSDARG00000027419 ENSDART00000003008 N/A N/A N/A 220.882±22.42 N/A N/A 0.038±0.02 0.089±0.04 0.128±0.00 N/A 4.797±0.00 N/A N/A N/A
ENSDART00000122348 N/A N/A N/A 42.897±12.74 N/A N/A N/A N/A N/A N/A 3.723±0.00 N/A N/A N/A
ENSDART00000138185 N/A N/A N/A N/A N/A N/A 0.202±0.00 0.160±0.00 0.064±0.00 N/A N/A N/A N/A N/A
ENSDART00000140419 N/A N/A N/A N/A N/A N/A N/A 0.465±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115806 ENST00000234160 N/A N/A N/A 0.853±0.00 N/A N/A 1.357±0.70 N/A 2.657±0.00 3.214±2.63 N/A 43.528±0.00 6.093±0.00 N/A
ENST00000442798 8.411±0.00 6.029±0.00 1.867±0.00 10.229±0.00 6.646±0.00 4.046±0.00 6.796±5.75 18.927±0.00 6.052±2.71 9.286±0.00 8.597±0.00 23.059±0.00 22.148±3.34 12.412±5.30
ENST00000444801 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471559 N/A N/A N/A N/A N/A N/A N/A 2.607±0.00 N/A N/A N/A N/A N/A N/A
ENST00000486498 N/A N/A 0.756±0.00 N/A 0.980±0.00 1.633±0.00 N/A 0.933±0.00 N/A 1.295±0.00 N/A N/A N/A N/A
ENST00000488928 N/A N/A N/A N/A 4.554±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493692 N/A N/A 1.706±0.00 2.628±0.00 N/A N/A N/A 2.142±0.00 3.358±0.00 N/A 3.898±0.00 7.609±0.00 N/A N/A
ENST00000497674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000128683 ENST00000344257 N/A 0.219±0.00 N/A N/A 0.336±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000358196 0.007±0.00 N/A N/A 2.353±0.00 N/A N/A 0.011±0.00 0.359±0.00 N/A N/A N/A N/A 0.061±0.00 N/A
ENST00000375272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000414527 N/A N/A 0.788±0.00 N/A N/A N/A N/A N/A N/A 0.112±0.00 N/A N/A N/A N/A
ENST00000429023 N/A N/A N/A N/A 0.072±0.00 N/A N/A N/A N/A 0.426±0.00 N/A N/A N/A N/A
ENST00000445006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462739 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478562 N/A N/A N/A N/A 0.209±0.00 N/A 0.008±0.00 N/A 0.025±0.00 0.058±0.00 N/A 0.157±0.00 0.010±0.00 N/A
ENST00000485013 N/A N/A N/A N/A N/A N/A N/A N/A 0.119±0.00 N/A N/A N/A N/A N/A
ENST00000486850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488724 N/A N/A N/A N/A N/A N/A 0.028±0.00 N/A 0.217±0.00 N/A N/A N/A N/A N/A
ENST00000493270 0.137±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.080±0.00 N/A
ENST00000493875 N/A 0.036±0.00 N/A N/A 0.024±0.00 0.022±0.00 N/A N/A N/A N/A N/A 0.041±0.00 N/A N/A

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