C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003TC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000087742-ENSDARG00000020758 CGP 7955 11:31241123-31406540
GeneTranscriptPositionBiotype
ENSDARG00000020758 (tmem178)
transmembrane protein 178 		ENSDART00000008594 (tmem178-201) 31389244-31406540 protein_coding
ENSDARG00000087742 (MAP4K3 (2 of 2))
mitogen-activated protein kinase kinase kinase kinase 3 		ENSDART00000101667 (MAP4K3 (2 of 2)-201) 31241123-31384109 protein_coding
ENSDART00000155707 (MAP4K3 (2 of 2)-001) 31283512-31315066 protein_coding
ENSDART00000155877 (MAP4K3 (2 of 2)-002) 31299680-31384245 processed_transcript
CIL_0003TC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000011566-ENSG00000152154 CGP 9606 2:39249266-39717963
GeneTranscriptPositionBiotype
ENSG00000011566 (MAP4K3)
mitogen-activated protein kinase kinase kinase kinase 3 		ENST00000263881 (MAP4K3-001) 39249266-39437312 protein_coding
ENST00000341681 (MAP4K3-006) 39249283-39437301 protein_coding
ENST00000414968 (MAP4K3-008) 39293243-39325933 nonsense_mediated_decay
ENST00000429397 (MAP4K3-005) 39325788-39437147 nonsense_mediated_decay
ENST00000437545 (MAP4K3-014) 39249278-39379809 protein_coding
ENST00000437968 (MAP4K3-003) 39337575-39437228 nonsense_mediated_decay
ENST00000465701 (MAP4K3-009) 39290330-39299845 retained_intron
ENST00000474502 (MAP4K3-010) 39290328-39294297 processed_transcript
ENST00000475457 (MAP4K3-012) 39260691-39267425 retained_intron
ENST00000479708 (MAP4K3-013) 39258523-39261117 retained_intron
ENST00000484274 (MAP4K3-002) 39356165-39437065 protein_coding
ENST00000495648 (MAP4K3-011) 39271911-39278419 retained_intron
ENST00000497566 (MAP4K3-007) 39288215-39315517 retained_intron
ENSG00000152154 (TMEM178A)
transmembrane protein 178A 		ENST00000281961 (TMEM178A-001) 39665919-39717963 protein_coding
ENST00000413011 (TMEM178A-004) 39687307-39717209 processed_transcript
ENST00000437068 (TMEM178A-002) 39664982-39707136 processed_transcript
ENST00000482239 (TMEM178A-003) 39665498-39717450 processed_transcript
ENST00000495402 (TMEM178A-005) 39697813-39717093 processed_transcript
ENST00000618232 (TMEM178A-201) 39665967-39717956 protein_coding
ENSG00000231312 (AC007246.3)
 ENST00000366187 (AC007246.3-011) 39453839-39454726 antisense
ENST00000415640 (AC007246.3-001) 39518639-39665343 antisense
ENST00000422128 (AC007246.3-005) 39437402-39584648 antisense
ENST00000425775 (AC007246.3-007) 39516866-39599477 antisense
ENST00000426083 (AC007246.3-003) 39436637-39604076 antisense
ENST00000438649 (AC007246.3-004) 39514146-39599539 antisense
ENST00000443038 (AC007246.3-010) 39437369-39516768 antisense
ENST00000445520 (AC007246.3-009) 39437431-39474758 antisense
ENST00000446698 (AC007246.3-008) 39453922-39624356 antisense
ENST00000449569 (AC007246.3-002) 39437416-39601344 antisense
ENST00000451547 (AC007246.3-006) 39518675-39599539 antisense
ENSG00000252473 (SNORA67)
Small nucleolar RNA SNORA67 		ENST00000516664 (SNORA67.1-207) 39283657-39283791 snoRNA
ENSG00000273035 (RP11-449G16.1)
 ENST00000609671 (RP11-449G16.1-001) 39323328-39323804 sense_intronic
CIL_0003TC_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024242-ENSMUSG00000024245 CGP 10090 17:80580512-81001816
GeneTranscriptPositionBiotype
ENSMUSG00000024242 (Map4k3)
mitogen-activated protein kinase kinase kinase kinase 3 		ENSMUST00000025089 (Map4k3-201) 80580512-80728093 protein_coding
ENSMUST00000112389 (Map4k3-202) 80580512-80728093 protein_coding
ENSMUSG00000024245 (Tmem178)
transmembrane protein 178 		ENSMUST00000025092 (Tmem178-201) 80944632-81001816 protein_coding
ENSMUSG00000054957 (Gm9959)
predicted gene 9959 		ENSMUST00000068277 (Gm9959-201) 80728131-80728522 pseudogene
ENSMUSG00000071040 (Gm9386)
predicted pseudogene 9386 		ENSMUST00000095195 (Gm9386-201) 80938334-80938714 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003TC_0001ENSDARG00000020758ENSDART00000008594ENSDARG00000087742ENSDART00000101667ENSDART00000155707ENSDART00000155877CIL_0003TC_0002ENSG00000011566ENST00000263881ENST00000341681ENST00000414968ENST00000429397ENST00000437545ENST00000437968ENST00000465701ENST00000474502ENST00000475457ENST00000479708ENST00000484274ENST00000495648ENST00000497566ENSG00000152154ENST00000281961ENST00000413011ENST00000437068ENST00000482239ENST00000495402ENST00000618232ENSG00000231312ENST00000366187ENST00000415640ENST00000422128ENST00000425775ENST00000426083ENST00000438649ENST00000443038ENST00000445520ENST00000446698ENST00000449569ENST00000451547ENSG00000252473ENST00000516664ENSG00000273035ENST00000609671CIL_0003TC_0003ENSMUSG00000024242ENSMUST00000025089ENSMUST00000112389ENSMUSG00000024245ENSMUST00000025092ENSMUSG00000054957ENSMUST00000068277ENSMUSG00000071040ENSMUST00000095195
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003TC_0001ENSDARG00000020758ENSDART00000008594ENSDARG00000087742ENSDART00000101667CIL_0003TC_0002ENSG00000011566ENST00000263881ENST00000341681ENST00000437545ENST00000484274ENSG00000152154ENST00000281961ENST00000437068ENST00000618232ENSG00000231312ENST00000366187ENST00000422128ENST00000445520ENST00000449569ENSG00000252473ENST00000516664ENSG00000273035ENST00000609671CIL_0003TC_0003ENSMUSG00000024242ENSMUST00000025089ENSMUST00000112389ENSMUSG00000024245ENSMUST00000025092ENSMUSG00000054957ENSMUST00000068277ENSMUSG00000071040ENSMUST00000095195
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000020758 ENSDART00000008594 N/A N/A N/A 35.293±8.84 N/A N/A 27.691±24.95 0.225±0.00 0.128±0.00 N/A 1.121±0.00 N/A N/A N/A
ENSDARG00000087742 ENSDART00000101667 N/A N/A N/A 2.192±1.41 N/A N/A 1.840±0.33 N/A 0.181±0.00 N/A 2.000±0.00 N/A N/A N/A
ENSDART00000155707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000155877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000011566 ENST00000263881 2.109±0.00 N/A N/A 1.349±0.23 1.130±0.00 1.010±0.00 1.121±0.36 1.484±0.00 0.699±0.40 1.197±0.00 N/A 3.180±0.24 1.670±0.55 3.324±0.00
ENST00000341681 3.367±0.00 2.356±0.00 1.790±0.00 2.492±1.50 1.995±0.27 1.734±0.43 4.307±0.00 2.335±1.54 1.776±0.58 4.246±0.00 3.332±0.80 3.882±0.41 2.650±0.95 3.749±0.00
ENST00000414968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429397 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437545 N/A N/A 2.908±0.00 N/A N/A N/A 1.944±0.00 2.298±0.00 0.947±0.00 7.308±0.00 N/A 1.729±0.00 N/A N/A
ENST00000437968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465701 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474502 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.505±0.00
ENST00000495648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000152154 ENST00000281961 N/A 0.481±0.00 N/A 17.846±7.62 4.253±0.00 1.256±0.00 N/A 9.135±0.00 N/A 1.804±0.00 N/A 2.669±0.81 2.160±0.92 N/A
ENST00000413011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437068 N/A N/A N/A N/A N/A N/A N/A N/A 0.999±0.00 N/A N/A N/A N/A N/A
ENST00000482239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618232 N/A N/A N/A N/A N/A 0.969±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000231312 ENST00000366187 N/A N/A N/A N/A 3.398±0.00 N/A N/A N/A N/A N/A N/A 2.638±0.00 N/A N/A
ENST00000415640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422128 N/A N/A 5.497±0.00 12.271±0.00 N/A N/A 1.797±0.00 N/A 1.935±0.00 N/A 1.488±0.00 3.701±0.00 N/A N/A
ENST00000425775 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438649 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445520 6.699±0.00 1.777±0.00 N/A N/A 3.950±2.12 N/A 3.363±0.00 N/A 6.449±0.00 3.960±0.00 1.597±0.23 26.456±0.00 9.750±6.02 8.131±0.00
ENST00000446698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449569 1.091±0.00 N/A 0.389±0.00 1.954±0.86 0.756±0.06 0.594±0.00 0.431±0.25 1.074±0.30 0.461±0.00 0.874±0.07 0.350±0.00 0.832±0.61 0.871±0.43 0.747±0.17
ENST00000451547 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000252473 ENST00000516664 0.294±0.00 N/A N/A 1.887±0.00 0.601±0.00 N/A 0.709±0.00 0.740±0.00 N/A N/A N/A 3.328±3.80 N/A 0.275±0.00
ENSG00000273035 ENST00000609671 0.040±0.00 0.235±0.00 N/A 0.355±0.00 0.197±0.00 0.189±0.00 0.456±0.40 1.207±1.10 1.699±0.00 0.482±0.39 N/A 0.583±0.21 0.157±0.05 0.184±0.07
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024242 ENSMUST00000025089 12.317±3.25 10.411±2.17 15.420±1.84 9.979±2.90 7.344±2.13 9.473±3.57 5.455±1.60 7.574±4.50 3.612±1.41 25.329±3.23 2.067±0.53 9.009±1.64 9.572±3.89 3.303±1.92
ENSMUST00000112389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.890±0.00
ENSMUSG00000024245 ENSMUST00000025092 0.464±0.18 7.301±1.26 0.348±0.04 23.128±16.85 0.310±0.09 0.148±0.08 0.121±0.03 12.312±2.02 0.197±0.08 11.907±2.24 0.185±0.08 16.146±4.28 0.422±0.39 0.173±0.06
ENSMUSG00000054957 ENSMUST00000068277 0.604±0.15 0.533±0.31 0.052±0.00 N/A 0.305±0.14 N/A 0.171±0.06 0.790±0.14 0.243±0.12 0.445±0.05 0.261±0.08 0.922±0.29 0.377±0.29 9.110±0.00
ENSMUSG00000071040 ENSMUST00000095195 N/A N/A 0.055±0.00 0.051±0.00 N/A N/A 0.138±0.00 N/A 0.028±0.00 N/A N/A N/A 0.169±0.00 N/A

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