C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003VH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000154359-ENSG00000250305 CGP 9606 8:12721894-13031503
GeneTranscriptPositionBiotype
ENSG00000154359 (LONRF1)
LON peptidase N-terminal domain and ring finger 1 		ENST00000398246 (LONRF1-001) 12721894-12755490 protein_coding
ENST00000524526 (LONRF1-004) 12722981-12737095 protein_coding
ENST00000525024 (LONRF1-008) 12722944-12729387 protein_coding
ENST00000526610 (LONRF1-007) 12729174-12735626 retained_intron
ENST00000526680 (LONRF1-002) 12721906-12743243 nonsense_mediated_decay
ENST00000527055 (LONRF1-009) 12722758-12725998 retained_intron
ENST00000530693 (LONRF1-005) 12738029-12756073 processed_transcript
ENST00000533751 (LONRF1-003) 12722971-12754342 protein_coding
ENST00000534446 (LONRF1-006) 12736699-12738766 nonsense_mediated_decay
ENSG00000250305 (KIAA1456)
KIAA1456 		ENST00000400069 (KIAA1456-001) 12951332-13007670 protein_coding
ENST00000447063 (KIAA1456-002) 12945642-13031503 protein_coding
ENST00000524591 (KIAA1456-008) 12945677-13029777 protein_coding
ENST00000525249 (KIAA1456-004) 12945674-12990939 processed_transcript
ENST00000528335 (KIAA1456-005) 12951329-13006233 processed_transcript
ENST00000528753 (KIAA1456-003) 12951635-13007671 protein_coding
ENST00000529706 (KIAA1456-007) 13010262-13021233 retained_intron
ENST00000529978 (KIAA1456-006) 13012013-13026165 retained_intron
ENST00000532376 (KIAA1456-009) 12952022-13012692 protein_coding
ENSG00000251468 (RP11-369K16.1)
 ENST00000506173 (RP11-369K16.1-001) 12958387-12962200 unprocessed_pseudogene
ENSG00000254813 (RP11-252C15.1)
 ENST00000530228 (RP11-252C15.1-002) 12766062-12788456 lincRNA
ENST00000534827 (RP11-252C15.1-001) 12765849-12811478 lincRNA
ENSG00000255494 (LINC00681)
long intergenic non-protein coding RNA 681 		ENST00000530150 (LINC00681-001) 12794243-12818291 lincRNA
CIL_0003VH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039633-ENSMUSG00000039620 CGP 10090 8:36216064-36514320
GeneTranscriptPositionBiotype
ENSMUSG00000039620 (6430573F11Rik)
RIKEN cDNA 6430573F11 gene 		ENSMUST00000125492 (6430573F11Rik-004) 36505489-36512593 processed_transcript
ENSMUST00000135373 (6430573F11Rik-002) 36457548-36512956 protein_coding
ENSMUST00000147525 (6430573F11Rik-001) 36457574-36514320 protein_coding
ENSMUST00000152039 (6430573F11Rik-003) 36458182-36511591 nonsense_mediated_decay
ENSMUST00000171777 (6430573F11Rik-201) 36489191-36513013 protein_coding
ENSMUSG00000039633 (Lonrf1)
LON peptidase N-terminal domain and ring finger 1 		ENSMUST00000065297 (Lonrf1-201) 36216064-36249516 protein_coding
ENSMUSG00000098154 (Gm5787)
predicted gene 5787 		ENSMUST00000183049 (Gm5787-001) 36372599-36373642 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VH_0001ENSG00000154359ENST00000398246ENST00000524526ENST00000525024ENST00000526610ENST00000526680ENST00000527055ENST00000530693ENST00000533751ENST00000534446ENSG00000250305ENST00000400069ENST00000447063ENST00000524591ENST00000525249ENST00000528335ENST00000528753ENST00000529706ENST00000529978ENST00000532376ENSG00000251468ENST00000506173ENSG00000254813ENST00000530228ENST00000534827ENSG00000255494ENST00000530150CIL_0003VH_0002ENSMUSG00000039620ENSMUST00000125492ENSMUST00000135373ENSMUST00000147525ENSMUST00000152039ENSMUST00000171777ENSMUSG00000039633ENSMUST00000065297ENSMUSG00000098154ENSMUST00000183049
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VH_0001ENSG00000154359ENST00000398246ENST00000524526ENST00000525024ENST00000526680ENST00000533751ENSG00000250305ENST00000400069ENST00000524591ENST00000528335ENST00000528753ENST00000529706ENST00000529978ENSG00000251468ENST00000506173ENSG00000254813ENST00000530228ENST00000534827ENSG00000255494ENST00000530150CIL_0003VH_0002ENSMUSG00000039620ENSMUST00000125492ENSMUST00000135373ENSMUST00000147525ENSMUST00000152039ENSMUST00000171777ENSMUSG00000039633ENSMUST00000065297ENSMUSG00000098154ENSMUST00000183049
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000154359 ENST00000398246 3.390±0.00 N/A 0.811±0.00 1.788±0.43 1.622±0.00 1.737±0.47 1.033±0.00 0.518±0.00 1.205±0.95 2.098±1.19 1.450±0.75 2.721±1.77 1.559±0.35 5.228±1.41
ENST00000524526 2.547±0.00 N/A N/A 2.775±0.70 N/A N/A N/A 1.638±0.00 N/A N/A 1.304±0.00 2.065±0.00 2.850±0.00 13.929±0.00
ENST00000525024 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.955±0.00 N/A N/A 1.316±0.00 N/A
ENST00000526610 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526680 N/A 1.893±0.00 N/A 0.720±0.00 0.703±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533751 N/A N/A N/A N/A N/A N/A 0.411±0.00 N/A 1.022±0.00 N/A N/A N/A N/A N/A
ENST00000534446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000250305 ENST00000400069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.076±0.00 0.506±0.00 0.069±0.00 N/A
ENST00000447063 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524591 N/A 0.361±0.00 N/A 0.285±0.00 0.185±0.09 0.427±0.23 N/A N/A N/A N/A N/A 0.177±0.00 0.012±0.00 0.141±0.00
ENST00000525249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528335 N/A N/A N/A N/A N/A N/A N/A 2.817±0.00 N/A N/A 1.758±0.00 N/A N/A N/A
ENST00000528753 N/A N/A N/A N/A N/A 1.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529706 N/A N/A N/A N/A N/A N/A N/A 0.253±0.00 N/A N/A 0.105±0.00 0.162±0.00 0.513±0.00 N/A
ENST00000529978 0.176±0.00 0.553±0.00 N/A 0.612±0.31 0.321±0.14 N/A 1.161±0.26 0.660±0.00 0.091±0.00 0.480±0.05 0.048±0.01 0.119±0.07 0.074±0.00 0.592±0.00
ENST00000532376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000251468 ENST00000506173 0.008±0.00 0.263±0.00 0.032±0.00 0.108±0.00 0.137±0.00 N/A 0.051±0.00 0.064±0.00 0.090±0.00 N/A N/A 0.027±0.01 0.030±0.01 0.159±0.03
ENSG00000254813 ENST00000530228 N/A 0.083±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.064±0.00 N/A
ENST00000534827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.015±0.00 0.142±0.00 0.308±0.00
ENSG00000255494 ENST00000530150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.203±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000039620 ENSMUST00000125492 N/A N/A N/A 5.347±0.00 0.410±0.00 0.350±0.00 0.295±0.00 N/A 0.137±0.00 0.232±0.00 0.139±0.00 2.089±0.81 3.200±2.06 0.395±0.17
ENSMUST00000135373 0.826±0.26 0.988±0.20 0.790±0.02 0.198±0.00 1.171±0.33 0.403±0.13 0.203±0.05 0.772±0.27 0.660±0.46 0.313±0.17 0.102±0.05 0.913±0.34 0.748±0.37 0.353±0.00
ENSMUST00000147525 N/A 0.327±0.00 N/A 0.296±0.16 N/A 0.165±0.00 0.091±0.00 N/A 0.458±0.14 N/A 0.024±0.00 0.424±0.26 N/A 0.043±0.00
ENSMUST00000152039 N/A N/A N/A 5.800±0.00 N/A N/A 0.320±0.00 N/A N/A N/A 0.133±0.03 2.006±1.39 3.527±2.67 0.244±0.16
ENSMUST00000171777 0.383±0.09 N/A 1.185±0.06 0.799±0.09 N/A N/A 0.262±0.18 N/A 0.176±0.13 0.297±0.01 0.066±0.00 1.546±0.89 0.926±0.25 0.222±0.10
ENSMUSG00000039633 ENSMUST00000065297 1.714±0.96 2.957±0.71 7.468±2.45 6.647±2.21 0.873±0.48 0.607±0.12 0.357±0.15 2.379±0.51 1.235±0.87 1.380±0.35 3.763±0.82 5.351±1.71 4.397±2.69 1.410±0.31
ENSMUSG00000098154 ENSMUST00000183049 N/A N/A 0.015±0.01 0.331±0.28 0.154±0.00 N/A 0.025±0.00 0.028±0.00 0.019±0.01 N/A 0.149±0.07 0.114±0.05 0.179±0.20 0.073±0.03

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