C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 5787
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000183049 Gm5787-001 ENSMUSG00000098154 10090 - 8:36372599-36373642 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000183049
Transcript ID Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000183049 0.015±0.01 0.331±0.28 0.154±0.00 0.025±0.00 0.028±0.00 0.019±0.01 0.149±0.07 0.114±0.05 0.179±0.20 0.073±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VH CIL_0003VH_0002 CGP 8:36216064-36514320

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 983
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 745
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 963
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 983
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 983
ENST00000398586 GAPDHP15-001 processed_pseudogene Homo_sapiens 0 416
ENST00000402643 GAPDHP72-001 processed_pseudogene Homo_sapiens 0 791
ENST00000403475 RP11-378G13.2-001 processed_pseudogene Homo_sapiens 0 693
ENST00000405405 GAPDHP63-001 processed_pseudogene Homo_sapiens 0 819
ENST00000419696 GAPDHP64-001 processed_pseudogene Homo_sapiens 0 678
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 702
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 939
ENST00000425504 GAPDHP69-001 processed_pseudogene Homo_sapiens 0 747
ENST00000426454 GAPDHP51-001 processed_pseudogene Homo_sapiens 0 586
ENST00000433816 GAPDHP32-001 processed_pseudogene Homo_sapiens 0 523
ENST00000434621 GAPDHP68-001 processed_pseudogene Homo_sapiens 0 719
ENST00000436626 GAPDHP48-001 processed_pseudogene Homo_sapiens 0 433
ENST00000436818 GAPDHP26-001 processed_pseudogene Homo_sapiens 0 525
ENST00000438477 GAPDHP58-001 processed_pseudogene Homo_sapiens 0 675
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 525
ENST00000444107 GAPDHP20-001 processed_pseudogene Homo_sapiens 0 553
ENST00000444823 GAPDHP23-001 processed_pseudogene Homo_sapiens 0 507
ENST00000445880 RP1-52D1.1-001 processed_pseudogene Homo_sapiens 2e-30 134
ENST00000447427 GAPDHP27-001 processed_pseudogene Homo_sapiens 0 429
ENST00000450301 GAPDHP21-001 processed_pseudogene Homo_sapiens 0 630
ENST00000450472 GAPDHP14-001 processed_pseudogene Homo_sapiens 0 279
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 952
ENST00000455134 GAPDHP28-001 processed_pseudogene Homo_sapiens 0 688
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 418
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 745
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 745
ENST00000481866 GAPDHP39-001 processed_pseudogene Homo_sapiens 0 449
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 756
ENST00000505218 GAPDHP40-001 processed_pseudogene Homo_sapiens 0 669
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 774
ENST00000512110 AC007016.3-001 processed_pseudogene Homo_sapiens 0 241
ENST00000512278 GAPDHP76-001 unprocessed_pseudogene Homo_sapiens 0 315
ENST00000513369 RP11-159J3.1-001 processed_pseudogene Homo_sapiens 0 713
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 747
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 0 774
ENST00000513953 RP11-44N17.1-001 processed_pseudogene Homo_sapiens 0 464
ENST00000515281 GAPDHP70-001 processed_pseudogene Homo_sapiens 0 706
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 435
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 881

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